LV_35_samp_4444_26. Mbita West_2023

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Result Filters

Identifiers: BioSample: SAMN41711986; Sample name: Rubrivivax sp._LV_35_26. Mbita West_2023

Organism: Rubrivivax sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Rubrivivax; unclassified Rubrivivax

Attributes

isolate	samp_4444_concoct_1894
isolation source	lake water
collection date	2023-06-01
depth	1m
derived from	SAMN41659704
sample type	metagenomic assembly
metagenome source	freshwater metagenome
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	Kenya:Lake Victoria
latitude and longitude	0.4233 S 34.19795 E
collection method	Van dorn collection
conductivity	146.1(uS/cm)
dissolved oxygen	9.9mg/L
nitrate	ND
pH	8.3
sample collection device or method	Van dorn
sample storage temperature	-80 degree C
size fraction selected	0.22 micron
soluble reactive phosphorus	20.6(ug/L)
temperature	25.5degree C
total depth of water column	9.3m
total dissolved nitrogen	291(ug/L)
total nitrogen	302 (ug/L)
total phosphorus	52.8 (ug/L)
turbidity	5NTU
metagenomic	1
environmental-sample	1
geo_loc_me	Lake Victoria
Completeness(%)	80.02
Contamition (%)	17.28
Strain Heterogeneity (%)	39.02
Size (Mbp)	2.650587
No. Of Contigs	1136
GC_Content (%)	70.6
N50	2709
file	samp_4444_concoct_1894