Metagenome-assembled genome: binchicken_co173_48

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Fluviicola sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Crocinitomicaceae; Fluviicola; environmental samples

Attributes

broad-scale environmental context	engineered
collection date	not provided
environmental medium	engineered
geographic location	not applicable
investigation type	metagenome-assembled genome
isolation source	anaerobic digester metagenome
project name	The metagenome of the anaerobic co-digestion consortia
sample name	binchicken_co173_48
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	binchicken_co173_48
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	99.07
completeness software	CheckM2;1.0.2;default
contamination score	0.4
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	anaerobic digester biome
metagenomic source	anaerobic digester metagenome
sample derived from	SAMN06699085,SAMN10350574
scientific_name	uncultured Fluviicola sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5431133,SRR8449813 of study SRP103437.