Metagenome-assembled genome: binchicken_co101_158

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Result Filters

Organism: uncultured Fluviicola sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Crocinitomicaceae; Fluviicola; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2017-12
environmental medium	aquatic
geographic location	China
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	Metagenomic Insights Into the relationship between bacterial and Phages to Antibiotic Resistance in Swine Feedlot Wastewater Treatment
sample name	binchicken_co101_158
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	binchicken_co101_158
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	99.92
completeness software	CheckM2;1.0.2;default
contamination score	0.54
geographic location (latitude)	23.0
geographic location (longitude)	116.0
local environmental context	wastewater biome
metagenomic source	wastewater metagenome
sample derived from	SAMN15805248,SAMN15805257
scientific_name	uncultured Fluviicola sp.
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12447083,SRR12447102 of study SRP277370.