Metagenome-assembled genome: SRP219642_co8_467

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Result Filters

Organism: uncultured Fluviicola sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Crocinitomicaceae; Fluviicola; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2017-08-18
environmental medium	aquatic
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	freshwater metagenome
project name	Shotgun Illumina HiSeq sequencing of environmental whole genomes (metagenomes) in water samples from an urban watershed
sample name	SRP219642_co8_467
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP219642_co8_467
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	SemiBin2;2.0.2;default
completeness score	88.33
completeness software	CheckM2;1.0.2;default
contamination score	0.27
geographic location (latitude)	38.943062
geographic location (longitude)	-94.593613
local environmental context	freshwater biome
metagenomic source	freshwater metagenome
sample derived from	SAMN12647040,SAMN12647042
scientific_name	uncultured Fluviicola sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10036018,SRR10036034 of study SRP219642.