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Metagenome-assembled genome: ERP125453_co1_487

Identifiers
BioSample: SAMEA117373885; SRA: ERS22441422
Organism
uncultured Aquabacterium sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Aquabacterium; environmental samples
Attributes
broad-scale environmental contextaquatic
collection datenot provided
environmental mediumaquatic
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameMicrobial communities from subsurface basaltic aquifers in near carbon sequestration operations
sample nameERP125453_co1_487
ENA first public2024-12-11
ENA-CHECKLISTERC000047
INSDC center nameCMR
INSDC statuspublic
Submitter IdERP125453_co1_487
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;3.15.4;default
binning parameterscoverage and kmer
binning softwareSemiBin2;2.0.2;default
completeness score98.92
completeness softwareCheckM2;1.0.2;default
contamination score0.06
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextmetagenome
metagenomic sourcemetagenome
sample derived fromSAMEA7669922,SAMEA7669921
scientific_nameuncultured Aquabacterium sp.
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4904390,ERR4904391 of study ERP125453.

BioProject
PRJEB82487 Bin Chicken Rare Biosphere Genomes
Retrieve all samples from this project

Submission
EBI; 2024-12-12
Accession:
SAMEA117373885
ID:
45788472

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