Metagenome-assembled genome: SRP068000_co1_50

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Result Filters

Organism: uncultured Planctomycetota bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Planctomycetota; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2013-05
environmental medium	aquatic
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	marine sediment metagenome
project name	The study aims at describing the identity and activity of airborne microorganisms as well as the potential sources from where the cells got aerosolized.
sample name	SRP068000_co1_50
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP068000_co1_50
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	91.18
completeness software	CheckM2;1.0.2;default
contamination score	5.99
geographic location (latitude)	56.1033
geographic location (longitude)	10.4578
local environmental context	marine sediment biome
metagenomic source	marine sediment metagenome
sample derived from	SAMN04328855
scientific_name	uncultured Planctomycetota bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3085416,SRR3085435 of study SRP068000.