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Metagenome-assembled genome: ERP117304_co3_78

Identifiers
BioSample: SAMEA117363092; SRA: ERS22430627
Organism
uncultured Leptolyngbya sp.
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Leptolyngbyales; Leptolyngbyaceae; Leptolyngbya group; Leptolyngbya; environmental samples
Attributes
broad-scale environmental contextengineered
collection datenot provided
environmental mediumengineered
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcebiofilm metagenome
project nameThe establishment of epibacterial communities is fundamental to seaweed health, and fitness, in modulating ecological interactions and may also facilitate adaptation to new environments. Few recent studies have investigated the influence of abiotic factors like light, temperature as drivers of epibacterial community composition on seaweeds. Although salinity can determine bacterial abundance, growth and community composition, influence of salinity as a driver of epibacterial community composition has been rarely investigated for seaweeds and especially under long time scales. We also do not know how abiotic stressors may influence the ‘core’ bacterial species of seaweeds, if ‘core’ species exist. Following an initial (immediately after field collection, T0) sampling of epibacterial community of an invasive red seaweed Agarophyton vermicullophylum, we conducted a long term mesocosm experiment for 5 months, to examine the influence of three different salinities (low, medium and high) at two different time points (T1, T2) on the epibacterial community richness and composition of Agarophyton. Metagenomic sequencing showed that epibacterial communities changed significantly according to salinity and time points sampled. Epibacterial richness was significantly different between low and high salinities at both time points. Epibacterial richness also varied significantly among T1 and T2 within low, medium and high salinity level. Irrespective of salinity levels and time points sampled 727 taxa consistently appeared in all Agarophyton samples hinting at the presence of core bacterial species on the surface of the alga. Our results indicate that both salinity and time can be major driving forces in structuring epibacterial communities of seaweeds with respect to richness and β diversity. We highlight the necessity of conducting long term experiments allowing us to detect and understand epibacterial succession over time on seaweeds.
sample nameERP117304_co3_78
ENA first public2024-12-11
ENA-CHECKLISTERC000047
INSDC center nameCMR
INSDC statuspublic
Submitter IdERP117304_co3_78
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;3.15.4;default
binning parameterscoverage and kmer
binning softwareMetaBAT2;2.15;default
completeness score90.47
completeness softwareCheckM2;1.0.2;default
contamination score2.49
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextbiofilm biome
metagenomic sourcebiofilm metagenome
sample derived fromSAMEA5789063,SAMEA5789064
scientific_nameuncultured Leptolyngbya sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3534967,ERR3534968 of study ERP117304.

BioProject
PRJEB82487 Bin Chicken Rare Biosphere Genomes
Retrieve all samples from this project

Submission
EBI; 2024-12-12
Accession:
SAMEA117363092
ID:
45785187

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