MAG for uncultured beta proteobacterium

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Result Filters

Organism: uncultured beta proteobacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Fields
collection date	2020-07-22
environmental medium	not collected
geographic location	Denmark
isolation source	soil
project name	Microflora Danica
sample name	MFD08821.bin.1.29
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114827761
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T10:00:11Z
INSDC status	public
Submitter Id	MFD08821.bin.1.29
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	93.76
completeness software	CheckM2
contamination score	0.44
geographic location (latitude)	55.36067573
geographic location (longitude)	9.394363859
local environmental context	Poales, Cereal
metagenomic source	soil metagenome
sample derived from	ERS14381638
scientific_name	uncultured beta proteobacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured beta proteobacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project