MIGS Cultured Bacterial/Archaeal sample from Clost... - BioSample

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Result Filters

Identifiers: BioSample: SAMN00001465; Sample name: BCM-HMP0034; SRA: SRS001930

Organism: Clostridioides difficile NAP07
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile

Attributes

collection date	not determined
estimated size	3862000
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
source material identifiers	BEI HM-88
investigation type	bacteria_archaea
host taxonomy ID	9606 (9606)
local-scale environmental context	human-associated habitat [ENVO:00009003]
project name	Clostridium difficile NAP07
geographic location	not determined
reference for biomaterial	not determined
environmental medium	biological product [ENVO:02000043]
isolation and growth condition	not determined
environmental package	missing
strain	NAP07
number of replicons	not determined
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft105.7x;100
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	Newbler v. 2.3-10192009
misc_param: HMP supersite	gastrointestinal_tract
sequencing method	454