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Draft genome of Kocuria salsicia, strain G1

Identifiers
BioSample: SAMEA3489743; SRA: ERS796892
Organism
Kocuria salsicia
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria
Attributes
collected byMette Burmolle
isolateKocuria salsicia
isolation sourceMeat Chopper / Grinder in a Danish Slaughterhouse
sample name2
strainG1
ENA first public2015-09-22
ENA last update2015-10-13
ENA-CHECKLISTERC000011
External IdSAMEA3489743
INSDC center aliasUniversitetsparken 15
INSDC center nameUniversitetsparken 15
INSDC first public2015-09-22T17:00:56Z
INSDC last update2015-10-13T18:23:16Z
INSDC statuspublic
Submitter Id2
Description

Here we present a draft genome of Kocuria salsicia G1. The strain was isolated from a meat grinder in small Danish Slaughterhouse. We have in a recent publication shown how this strain can be involved in synergistic biofilm formation with other bacterial species isolated from the same environment. Genome sequencing libraries were prepared using the Nextera XT kit (Illumina, USA), according to the manufacturer’s recommendations, followed by sequencing as a part of the flowcell, as 2 × 250-base paired-end reads using the Illumina MiSeq (Illumina, USA) technology. The reads were cleaned and trimmed using CLC Genomics Workbench 7 (CLC bio, Denmark). Cleaned reads were assembled using SPAdes v 3.5.0. Obtained contigs were analyzed by VecScreen, to ensure no primer, phage or transposase contamination occurred in the contigs. Contigs smaller than 500bp were discarded.

BioProject
PRJEB9945 Draft genome of Kocuria salsicia G1
Retrieve all samples from this project

Submission
EBI; 2015-09-23
Accession:
SAMEA3489743
ID:
4107847

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