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Microbe sample from Escherichia coli

Identifiers
BioSample: SAMN40022414; Sample name: LACPHL-BACT-2024-00037; SRA: SRS20516664
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Microbe; version 1.0
Attributes
strainLACPHL-BACT-2024-00037
hostHomo sapiens
isolation sourceurine
collection date2023-10-10
geographic locationUSA: California, Los Angeles County
sample typewhole organism
MLSTST131
PubMLST schemeecoli_achtman_4
AMRFinderPlus AMR core genesglpT_E448K,ptsI_V25I,blaTEM-1,parC_E84V,parC_S80I,gyrA_D87N,gyrA_S83L,pmrB_E123D,parE_I529L,uhpT_E350Q,dfrA17,aadA5,sul1,mph(A),tet(A),aph(6)-Id,aph(3'')-Ib,sul2,blaCTX-M-15,aac(3)-IIe,catB3,blaOXA-1,aac(6')-Ib-cr5
AMRFinderPlus AMR subclassesAMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN,BETA-LACTAM,CEPHALOSPORIN,CHLORAMPHENICOL,COLISTIN,EFFLUX,FOSFOMYCIN,GENTAMICIN,MACROLIDE,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
AMRFinderPlus DB version2023-04-17.1
BioProject
PRJNA1004324
Retrieve all samples from this project

Submission
LACPHL; 2024-02-21
Accession:
SAMN40022414
ID:
40022414

BioProject SRA Nucleotide

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