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Uncultivated Alistipes sp. UBA3409 genome recovered from ERX166943

Identifiers
BioSample: SAMN06453223; Sample name: Alistipes sp. UBA3409; SRA: SRS2030423
Organism
Alistipes sp. UBA3409
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; unclassified Alistipes
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3409
isolation sourcedigestive tract (UBERON:0001555); intestine (UBERON:0000160)
metagenome sourcemouse gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX166943 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated85.78%
contamination_estimated2.16%
environmental_sampletrue
genome_coverage25.2
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: ERR192254.
Description

Uncultivated genome recovered from an assembly of the ERX166943 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453223
ID:
6453223

BioProject SRA Nucleotide

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