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Uncultivated Empedobacter sp. UBA5571 genome recovered from SRX823046

Identifiers
BioSample: SAMN06455625; Sample name: Empedobacter sp. UBA5571; SRA: SRS2034592
Organism
Empedobacter sp. UBA5571
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter; unclassified Empedobacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA5571
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX823046 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated83.71%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage6.22
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749663.
Description

Uncultivated genome recovered from an assembly of the SRX823046 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455625
ID:
6455625

BioProject SRA Nucleotide

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