U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Halomonas sp. UBA3980 genome recovered from ERX552316

Identifiers
BioSample: SAMN06454236; Sample name: Halomonas sp. UBA3980; SRA: SRS2030949
Organism
Halomonas sp. UBA3980
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas; unclassified Halomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA3980
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX552316 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated83.52%
contamination_estimated2.37%
environmental_sampletrue
genome_coverage12.92
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR594392.
Description

Uncultivated genome recovered from an assembly of the ERX552316 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454236
ID:
6454236

BioProject SRA Nucleotide

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center