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Uncultivated Helicobacter sp. UBA716 genome recovered from SRX1166929

Identifiers
BioSample: SAMN06453695; Sample name: Helicobacter sp. UBA716; SRA: SRS2032209
Organism
Helicobacter sp. UBA716
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; unclassified Helicobacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationChina: Jiangsu province
isolateUBA716
isolation sourcemouse intestine 1group
metagenome sourcemouse gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX1166929 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated88.38%
contamination_estimated2.47%
environmental_sampletrue
genome_coverage13.82
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: SRR2191007.
Description

Uncultivated genome recovered from an assembly of the SRX1166929 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453695
ID:
6453695

BioProject SRA Nucleotide

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