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Uncultivated Ruminococcus sp. UBA1780 genome recovered from SRX498681

Identifiers
BioSample: SAMN06457766; Sample name: Ruminococcus sp. UBA1780; SRA: SRS2034052
Organism
Ruminococcus sp. UBA1780
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; unclassified Ruminococcus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationGermany: Zoo of Hamburg
isolateUBA1780
isolation sourceFeces of six-years-old elephant
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX498681 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated84.85%
contamination_estimated2.24%
environmental_sampletrue
genome_coverage17.56
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1221442.
Description

Uncultivated genome recovered from an assembly of the SRX498681 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457766
ID:
6457766

BioProject SRA Nucleotide

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