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Uncultivated Treponema sp. UBA3662 genome recovered from SRX290712

Identifiers
BioSample: SAMN06453200; Sample name: Treponema sp. UBA3662; SRA: SRS2033016
Organism
Treponema sp. UBA3662
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3662
isolation sourcelow methane producing sheep
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX290712 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated78.27%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage20.14
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR873602.
Description

Uncultivated genome recovered from an assembly of the SRX290712 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453200
ID:
6453200

BioProject SRA Nucleotide

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