MIGS Cultured Bacterial/Archaeal sample from Trepo... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Treponema vincentii ATCC 35580

Identifiers: BioSample: SAMN00001903; Sample name: HMP090-454 Sample; SRA: SRS002070

Organism: Treponema vincentii ATCC 35580
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema vincentii

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2515000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Treponema vincentii ATCC 35580
geographic location	not determined
source material identifiers	ATCC 35580
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	ATCC 35580
environmental package	missing
culture collection	ATCC:35580
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft15x;79
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	not determined
misc_param: HMP supersite	oral
sequencing method	454
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf

Description

Treponema vincentii is a spirochete. It is not a typical constituent of the human oral cavity bacterial flora in healthy individuals. Implicated in periodontitis and acute necrotizing ulcerative gingivitis (trench mouth) when present with the rod-shaped bacterium Fusobacterium fusiforme. This strain was isolated from the human oral cavity.

Keywords: GSC:MIxS;MIGS:6.0