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SNP FAQ Archive [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-.

  • This publication is provided for historical reference only and the information may be out of date.

This publication is provided for historical reference only and the information may be out of date.

Locating SNPs in a Protein Family

Created: ; Last Update: February 25, 2014.

How do I search for a particular protein family that contains SNPs?

You can search for proteins that have SNPs from the NCBI protein database using the protein_snp subset.

Example:

1.

Search Entrez Protein using the protein accession and protein_snp subset (sb) as search terms.

2.

Then search Entrez Protein using the protein found in the previous step and protein_snp[sb] as search terms.

3.

Select Links located on the far right side of the page for the protein of interest, and when the drop-down menu appears, select SNP. This will take you to a SNP page that contains a list of the SNPs for the protein entry.

4.

Locate the display box at the bottom left-hand corner of the page and choose one of the SNP reports (FASTA, ASN.1, Flat File, or XML), which will easily allow you to parse the data.

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