Conserved Protein Domain Family
PRK05901

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PRK05901: PRK05901 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 235640
Aligned: 106 rows
Threshold Bit Score: 434.423
Created: 9-Dec-2010
Updated: 17-Jan-2013
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
237785650   2 ETAKTGMTEKPKKAVAKKAATKKTAAKKTAAKKTAAKKATVKKTAANkvakkqasa-----ssalhedtsAAADESSSSS 76 
72080402    1 ---MTENKELFPQKEDFIPISNINQNSSEYEFIIEKLEQKLEQKHQKigknssnldnfsiflshdeiykyIEKWNLAIEE 77 
161936260   1 ---MTENKELFPQKEDFIPISNINQNSSEYEFIIEKLEQKLEQKHQKigknssnldnfsiflshdeiykyIEKWNLAIEE 77 
71893415    1 ---MTENKELFPQKEDFIPISNINQNSSEYNFIIEKLEQELEQKHQKigknssnldnfsiflshdeiykyIEKWNLAIEE 77 
71894468    1 ----MDQLKKSKPHQKKWKVEEVLEFIERKKLDIEEEVVDELFDFFA--------------------------------- 43 
148377531   1 -------MSKKSELKATVKLIKSHLKNLGKSTLTQEEVYEYLDSIKVevpdddmdiml-ellleeniladDFDDGDASFV 72 
193216688   1 MNNEFDQSVDLVIDKLKQELAKATKKDKNKKAFSQDEIYELLEKKNLelseeatdvl---feklleqgvlSSDIDFGDDD 77 
269114989   4 TKNNVESSVKCITKIVADELKKVQKKNKDKKAFTQDEIFEFLNKKNLyvddeeaeall-eslfaanlvssDTDDEDIEDI 82 
291320189   1 -------MSKKSELKATVKLIKSHLKNLGKSTLTQEEVYEYLDSIKVevpdddmdiml-ellleeniladDFDEGDASFV 72 
294155544   1 --------------------------MNNNTTPILSLIKKFMKDNKKkslnqeevfa---fldsinvfvdEDDADELLEE 51 
237785650  77 QEKAAPKKSTAKKATKRTAAKKSSAKKTTAKKTAAKKTAAKKTaakktaakktaakktttkkstakkaaskksaakkttk 156
72080402   78 EKLDDFFQTLIQRKIIADEVDKEDLENVSSFDFAEQINNKKSVrdkk--------------------------------- 124
161936260  78 EKLDDFFQTLIQRKIIADEVDKEDLENVSSFDFAEQINNKKSVrdkk--------------------------------- 124
71893415   78 EKLDDFFQTLIQRKIIADEVDKEDLENVSSFDFAEQINNKKSVrdkk--------------------------------- 124
71894468   44 ------QKNLFKADENIVSSEKDLKEEFEEELKAEKKSKSAKDlklnf-------------------------------- 85 
148377531  73 NSDDIMDEVDAEKSMNKLDSSKSYDDSLDSKIQVKSNDTENLEddseyskli---------------------------- 124
193216688  78 EINETDFFESLANDKKSKKTKKTKTDALDDELHEE--------------------------------------------- 112
269114989  83 DINSLDDEVAHAAAKDDDNDDDDAEEEEKDFDPSKIKELEEENld----------------------------------- 127
291320189  73 NSDDIMDEVDAEKSINKLDSSKGYDDGLDSKIQVKSNDTEDLEddseyskli---------------------------- 124
294155544  52 LISKKIIKDEVDAGDEDKVTNDDFDDIPDSIKKKIKNINLDDE------------------------------------- 94 
237785650 157 tankrssasrkstkDTAAEKNTdlitsddqvvdehpdqdasngadadlhqdgddfelhdiDDDDDIDMDHSDLDDDLDDD 236
72080402  125 -----------nkkYSQDFDQS----------------------------------------------LINLDDQNFDIN 147
161936260 125 ---------------------------------------------------------nkkYSQDFDQSLINLDDQNFDIN 147
71893415  125 -----------nkkYSQDFDQS----------------------------------------------LINLDDQNFDIN 147
71894468   86 ----------nadfDDDLLDED--------------------------------------DSPLFDSDDDEEFDDDFIED 117
148377531 125 ----------------------------------------------------gnysdnsyDSYEEESEDFMVMDDDYHDS 152
193216688 113 --------------DIEDLEPT-------------------------------------------------LEDLEEDED 129
269114989 128 -------------eDINIDQEFddssirskee------------------ddsemsfdedDNHFVKKAFNDLDDEEYNDY 176
291320189 125 ----------------------------------------------------gnysdnsyDSYEDESEDFMVMDDDYHDS 152
294155544  95 --------------DLDAPTNL---------------------------------------EDDLFDDEDDLDLIDGEME 121
237785650 237 VDHDDLDHDDDLDSDDLDEESGLDEDEMDDDHSsspikrtndsstddddddddsd-----ngnfvwdedesaalrqarkd 311
72080402  148 HNEEDDNSDLNLGQSVDDSLKIQEIDDLDYITEnspnqyhkpk-----------------------------vysdevyl 198
161936260 148 HNEEDDNSELNLGQSVDDSLKIQEIDDLDYITEnspnqyhkpk-----------------------------vysdevyl 198
71893415  148 HNEEDDNSDLNLGQSVDDSLKIQEIDDLDYITEnspnqyhkpk-----------------------------vysdevyl 198
71894468  118 EEVDVNLEEYDHDEEDEEEDEKLEEDDELDFSLvasdddldeldldnfspd-------------eidlqideenkkqdls 184
148377531 153 SYDEDDEEDEIVYKTDDKDQSATKSKRGRKPKDklsldtleledfsaeei----------------dlsanlsvkkedlk 216
193216688 130 FKEDLDDEKDLEEDIDENEEFGIESEADDSSPQydnyteklsddfdededieaenllkeydtyeikledqhisrednmls 209
269114989 177 YGEDFDEYEDDDYQTNHKQGKKQSYDDFDANNLlkeyndediklsee----------------------kvydqddiklt 234
291320189 153 SYDEDDEEDEIVYKTDDKDQSATKSKRGRKPKDklsldtleledfsaeei----------------dlsanlsvkkedlk 216
294155544 122 DFDVEELMNPDNLKLESEESDEKEDDTDEAAADdeeyqldeiddldlhsldlqrf------adeevlledtqiasgkslt 195
237785650 312 aeLTASADSVRAYLKQIGKV-ALLNAEQEVSLAQRIEAGlyanhkleelkasntklSPAQSrdlrsiahdgRKAKNHLLE 390
72080402  199 nkLTDTSDMIKWYMRWIGKYgKLLTAEEERELAKKMKIKgr----------------------------igKKARDTLIK 250
161936260 199 nkLTDTSDMIKWYMRWIGKYgKLLTAEEERELAKKMKIKgr----------------------------igKKARDTLIK 250
71893415  199 nkLTDTSDMIKWYMRWIGKYgKLLTAEEERELAKKMKIKgr----------------------------igKKARDTLIK 250
71894468  185 nkLTETTDIVKWYMRWIGKYgKLLTPQEEKDLAEEMDKGgs----------------------------rgKRARDLIIK 236
148377531 217 nkLTETNDIVKWYMRWIGKYgKLLQPEEEFELATEMDKGgf----------------------------kgKRARDKLIK 268
193216688 210 nkLTETNDIVKWYMRWIGKYgKLLTPKKERELAIKMEEAlannn-----------------------yyryKRARDMLVK 266
269114989 235 nkLTETNDIVKWYMRWIGKYgKLLTTNEEQALAKKMQEAkea------------nnYYKYK-----------KARDMLVK 291
291320189 217 nkLTETNDIVKWYMRWIGKYgKLLQPEEEFELATEMDKGgf----------------------------rgKRARDKLIK 268
294155544 196 nkLTETNDIVKWYMRWIGKYgELLKPDEERRLAKLMEKGgf----------------------------rgKRARDKLIM 247
237785650 391 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVIN 470
72080402  251 RNLRLVVNSAKRYKNRGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETIN 330
161936260 251 RNLRLVVNSAKRYKNRGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETIN 330
71893415  251 RNLRLVVNSAKRYKNRGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETIN 330
71894468  237 RNLRLVVNAAKKYKNRGLSFIDLVSEGNAGLLKAAQKFDIKKGFKFSTYATWWIRQSISRAVADQARIIRVPVHMVETIN 316
148377531 269 RNLRLVINNAKKYKNRGLSFIDLISEGNSGIIKAVQKYNVNKGFKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETIN 348
193216688 267 RNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKYDYKKGFKFSTYATWWIRQAITRAVADQARTIRVPVHMVETIN 346
269114989 292 RNLRLVINNAKRYKNRGLNFIDLISEGNAGIMKAVSKYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETIN 371
291320189 269 RNLRLVINNAKKYKNRGLSFIDLISEGNSGIIKAVQKYNVNKGFKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETIN 348
294155544 248 RNLRLVINNAKKYKNRGLTFIDLISEGNAGILKAVQKYNVEKGFKFSTYATWWIRQAITRAVADQARTIRVPVHMVETIN 327
237785650 471 KLGRIQRELLQDLSREPTPEELAREMD-----ITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVS 545
72080402  331 KINKVERELQQEKGLNPTAEEISERLGg---eFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDFIKDENMISPVDYAI 407
161936260 331 KINKVERELQQEKGLNPTAEEISERLGg---eFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDFIKDENMISPVDYAI 407
71893415  331 KINKVERELQQEKGLNPTAEEISERLDg---eFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDFIKDENMISPVDYAI 407
71894468  317 KIYKIEREIQQENGGEIIDEEIAARLGgkskkYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDESIISPVEFAD 396
148377531 349 KITKIERELQQENGVDPTDEEIAQRYGn---dFTAEKVRHIRKINIDPISLDKQIGKENDSSFSDFVKDESVVNPVDYAS 425
193216688 347 KILKIERELQQEFGYPPTDEEIAKKFGg---dFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFAS 423
269114989 372 KILKIERELQQENGYPPTDEEIAKKYGg---dFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPTSYAS 448
291320189 349 KITKIERELQQENGVDPTDEEIAQRYGn---dFTAEKVRHIRKINIGPISLDKQIGKENDSSFSDFVKDESVVNPVDYAS 425
294155544 328 KITKIERELQQELGHEPTDAQIANRFGn---eYTEEKVRYIRKINIDPISLDKQIGKENDSSFSDFVKDDSVMTPVDFAS 404
237785650 546 FTLLQDQLQDVLK-TLTER-EAGVVRLRFGLTDG------MPRTLDEIGQVY-G----VTRERIRQIESKTMSKLRHPSR 612
72080402  408 REEKAKVLLEMIDsTLDYD-ERDFIKRRYGVGTNdegipyQAHSFEELAAMR-R----VTKERVRQIEAKILKKLRTPHR 481
161936260 408 REEKAKVLLEMIDsTLDYD-ERDFIKRRYGVGTNdegipyQAHSFEELAAMR-R----VTKERVRQIEAKILKKLRTPHR 481
71893415  408 REEKAKVLLEMIDsTLDYD-ERDFIKRRYGVGTNdegipyQAHSFEELAAMR-R----VTKERVRQIEAKILKKLRTPHR 481
71894468  397 KEELITKINYYVEkLLSEA-EADLIKRYHGIGYDakgnpvRSATLDEISKDFrGegkkISKERVRQIITKIYKKLRGYPE 475
148377531 426 HEELVETLNAILKdTLDAD-EYELICKRYGVGFDnngekyKVFSLEELALER-N----VSKERIRQIENKILRKLKSSPE 499
193216688 424 QQELAVILNEMINsSLDPE-DQALIRKRYGVGQDpsgvpyRPHTLDELAKEL-N----ISKEKVRKLEAKILRKLKHPQK 497
269114989 449 HEELSVIINEMIEeGLSDQaDRDLIRKRFGINDLkgn-kyKPHTLDELSKEL-G----ISKEKVRQLETKVLRKLKHPQK 522
291320189 426 HEELVETLNAILKdTLDAD-EYELICKRYGVGFDnngekyKVFSLEELALER-N----VSKERIRQIENKILRKLKSSPE 499
294155544 405 QEQLSELLLELINkSLERD-ERELICKRFGVGVDsegnkyRVHSLDELAKERgG----VSKERVRQIENKILRKLKNSSK 479
237785650 613 S-QVLRDYLD 621
72080402  482 R-LSLRDFN- 489
161936260 482 R-LSLRDFN- 489
71893415  482 R-LSLRDFN- 489
71894468  476 VvELFENFIK 485
148377531 500 RsRYLKVFME 509
193216688 498 R-KKLKEFYL 506
269114989 523 R-RKLKEFFN 531
291320189 500 RsRYLKVFME 509
294155544 480 NgRHLRDFIK 489
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