Conserved Protein Domain Family
FH_FOXF1

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cd20049: FH_FOXF1 
Forkhead (FH) domain found in Forkhead box protein F1 (FOXF1) and similar proteins
FOXF1, also called Forkhead-related activator 1 (FREAC-1), Forkhead-related protein FKHL5, or Forkhead-related transcription factor 1, is a probable transcription activator for a number of lung-specific genes. FOXF1 mutations in sporadic and familial cases of alveolar capillary dysplasia with misaligned pulmonary veins (ACD/MPV) suggest its involvement in ACD/MPV and lung organogenesis. The role of FOXF1 in cancer is conflicting; its loss in some cancers suggests a tumor suppressive function, but its abundance in others is associated with protumorigenic and metastatic traits. The FH domain is a winged helix DNA-binding domain. FOX transcription factors recognize the core sequence 5'-(A/C)AA(C/T)A-3'.
Statistics
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PSSM-Id: 410823
Aligned: 6 rows
Threshold Bit Score: 207.608
Created: 18-Dec-2018
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                 ##  #                  ## ##  #      #         ### #      
Q12946        49 PPYSYIALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 128 human
Q28BS5        55 PPYSYIALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 134 tropical clawed...
A1L1S5        53 PPYSYIALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 132 zebrafish
XP_006001190  58 PPYSYIALIVMAIQSSPTKRLTLSEIYQFLQARFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 137 coelacanth
XP_009645510  30 PPYSYIALIVMAIQSSPSKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 109 little egret
XP_007884698  55 PPYSYIALIVMAIQNSPSKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPaS 134 elephant shark
Feature 1                           
Q12946       129 EFMFEEGSFRRRPRGFRRK 147 human
Q28BS5       135 EFMFEEGSFRRRPRGFRRK 153 tropical clawed frog
A1L1S5       133 EFMFEEGSFRRRPRGFRRK 151 zebrafish
XP_006001190 138 EFMFEEGSFRRRPRGFRRK 156 coelacanth
XP_009645510 110 EFMFEEGSFRRRPRGFRRK 128 little egret
XP_007884698 135 EFMFEEGSFRRRPRGFRRK 153 elephant shark

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