1MR3,1KSG,2AL7,1M2O,1UPT,1R8Q,1E0S,1ZD9,1FZQ,1ZJ6


Conserved Protein Domain Family
Arf_Arl

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cd00878: Arf_Arl 
Click on image for an interactive view with Cn3D
ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions.
Statistics
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PSSM-Id: 206644
Aligned: 47 rows
Threshold Bit Score: 144.256
Created: 4-Feb-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:1KSG: Mus musculus Arl2 binds GTP and Mg2+, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #######                        ##                           #            
1MR3_F        19 RILMVGLDGAGKTTVLYKLKLge----------vITTIPTIGFNVETVQYk------nISFTVWDVGGQDrirSLWRHYY 82  baker's yeast
1KSG_A        20 RLLMLGLDNAGKTTILKKFNGed----------vDTISPTLGFNIKTLEHr------gFKLNIWDVGGQKslrSYWRNYF 83  house mouse
XP_645461     11 VVIVLGLDDSGKTSVLYSLQKkn----------iDTVQPTEHSPLENIKIk------qYKMMAWDLSGKDkvrNLWRHYF 74  Dictyostelium d...
BAE20536       1 MCLLLGAAGVGKTLLVKRLQKlssgdgkgdlgepPPTRPTVGTNLTDIVAh-------RKITIRELGGCMs--PIWSSYY 71  house mouse
1ZD9_A        24 ELTLVGLQYSGKTTFVNVIASgq---------fnEDMIPTVGFNMRKITKg------nVTIKLWDIGGQPrfrSMWERYC 88  human
1FZQ_A        18 RILLLGLDNAGKTTLLKQLASed----------iSHITPTQGFNIKSVQSq------gFKLNVWDIGGQRkirPYWRSYF 81  house mouse
NP_001014943  34 DLVCIGLTGSGKTSLLSKLCSes----------pDSVVSTTGFSIKAVPFq------nAILNVKELGGADnirKYWSRYY 97  cow
NP_597558     18 RILVLGLDNAGKTTILHKLLGkp----------tERVHPTFGYQIHDVVYk------aHSLIVLDIGGQSvfvEYWSSYY 81  Encephalitozoon...
NP_013858     18 RCLILGLDNSGKSTIVNKLLPkde-------qnnDGIMPTVGFQIHSLMIk------dVTISLWDIGGQRtlrPFWDNYF 84  baker's yeast
XP_447291     18 RCLILGLDNSGKSTIVNGLLPese--------kcNSITPTVGFQIHSIVVesaqdgktYKVNLWDIGGQRtlrPFWDNYF 89  Candida glabrat...
Feature 1                                                       ## #                             
1MR3_F        83 RNTEGVIFVIDSNDRs-RIGEAREVMQRMLnede---lrnAVWLVFANKQDLPeam---------saaEITEKLglhs-- 147 baker's yeast
1KSG_A        84 ESTDGLIWVVDSADRq-RMQDCQRELQSLLveer---lagATLLIFANKQDLPgal---------scnAIQEALelds-- 148 house mouse
XP_645461     75 VGSDAVLFVIDSSNRd-RLIESKQELAKLLnepl---lkdVVFMIFLNKCDLPnam---------tqqEIEDQLqiesil 141 Dictyostelium d...
BAE20536      72 GNCHSLLFMMDASNPt-QPSASCMQLLGLLsaee---lekASVLILFNKIDLPcym---------tmeEMKSLMrlpdi- 137 house mouse
1ZD9_A        89 RGVSAIVYMVDAADQe-KIEASKNELHNLLdkpq---lqgIPVLVLGNKRDLPgal---------dekELIEKMnlsa-- 153 human
1FZQ_A        82 ENTDILIYVIDSADRk-RFEETGQELTELLeeek---lscVPVLIFANKQDLLtaa---------pasEIAEGLnlht-- 146 house mouse
NP_001014943  98 QGSQGVIFVLDSASSedDLETARNELHSALqhpq---lctLPFLILANHQDKPaar---------svqEVKKYFelep-- 163 cow
NP_597558     82 EDVDGVVFVFDSSDRr-SFAEHIGHIRSALvdtp---mliLANKSDLNPTFNAe--------------SLGSDLcel--- 140 Encephalitozoon...
NP_013858     85 DKTQAMIWCIDVSLSm-RFDETLQELKELInrdenrigyeCAVIVVLNKIDLVedkselhrrcllvesELKCLFkp---- 159 baker's yeast
XP_447291     90 DKTDVLLWCVDIASSl-RFDESFNELRELVmqdrdrigyqCKLVVAINKIDLVeqadleh-yahdieqKIEHIL------ 161 Candida glabrat...
Feature 1                          ###                        
1MR3_F       148 -------irnRPWFIQSTCATs---------gEGLYEGLEWLSNN 176 baker's yeast
1KSG_A       149 -------irsHHWRIQGCSAVt---------gEDLLPGIDWLLDD 177 house mouse
XP_645461    142 pppqnasdvnRRIKIVTTSAVstn-----qynLNIQDSFIWIIEQ 181 Dictyostelium discoideum
BAE20536     138 -----iacakQNITAVEISARn---------gTGLATVLLWLQNQ 168 house mouse
1ZD9_A       154 -------iqdREICCYSISCKe---------kDNIDITLQWLIQH 182 human
1FZQ_A       147 -------irdRVWQIQSCSALt---------gEGVQDGMNWVCKN 175 house mouse
NP_001014943 164 ------largKRWILQPCSLDd---------mEALKDSFSQLINL 193 cow
NP_597558    141 -------lkkSDVRLVKCCGVs---------gDGLEAGFDWILGK 169 Encephalitozoon cuniculi GB-M1
NP_013858    160 ---------dIRIELVKCSGVt---------gEGIDNLRDRLVES 186 baker's yeast
XP_447291    162 ----------HHGQSVGESSIghyvlcsgktgAGIENLAQMIVDR 196 Candida glabrata CBS138

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