2HN2,2IUB,2BBJ


Conserved Protein Domain Family
TmCorA-like_1

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cd12828: TmCorA-like_1 
Click on image for an interactive view with Cn3D
Thermotoga maritima CorA_like subfamily
This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213362
Aligned: 203 rows
Threshold Bit Score: 281.626
Created: 17-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 88 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:2HN2: Thermotoga maritime CorA forms a homopentamer in which each monomer contacts two other monomers, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #  ##     ## # #                                     
2HN2_A     61 TPTWINITGIhrtDVVQRVGEFFgIHPLVLEDIlnvhQRPKVEFFenYVFIVLKmftydkn----lheleseQVSLILtk 136 Thermotoga maritima
ACV48295   26 GTTWIHAPEVt-dAELDAIAETFaIHPLTVEDLrn-gVRAKTETFpeYTFVLLKtitlaggettfaeelsttPIGLFVgh 103 Halomicrobium muko...
EHB59888   27 GTTWVRVTDPs-eAELDEVADGYdLHHLEIEDVlg-dVRPKVEEFdgHTFVLLKaatlrrgdvafadelrdqQVAFFLgd 104 Halobacterium sp. DL1
CBX01458   61 HNIWIDISGLadiEKITKICSEYnIHPLVIEDLlntrQRPKLDIVddYIFVVFKllqsppn----hlsynteQFCLIIkq 136 Legionella pneumop...
ADN35781   65 GSKWVIITGLantQLINDICEFYgMHPLTTEDIlnthQRPKIESFddYIYIVIKvilpmed-----egiyseQASIILfk 139 Methanoplanus petr...
ACV68329   56 WNHWIQCIGVhdpAVLEGFRKHFgIHPLALEDVmnteHRPKLEHFpdSLFLVCKwlgfned-----rslsdnHISLIMqn 130 Desulfohalobium re...
ABD40719   66 GICWVHISGLkdiDKINQILSDAiLHPLIAEDVfntkGRAKVEDFgdTLFIILDiilsng------telqsrKINIITke 139 Methanospirillum h...
CAJ35645   27 YNRWISLTRPe-kQDIDLVVSKFsLHPLVIEDItnprEIPKVDEYagYTFVVTDipeien------esviihKLYIILgk 99  uncultured methano...
AAB90452   63 KKLWIDVVGVhdeSLIAKICEFLgIHPLAAEDIlntaQRVKIEDYddHLFLVLKillyne-------tleidQLSLVLkk 135 Archaeoglobus fulg...
BAI62823   27 CNKWVSMLSPs-pQEFKAVADAFeLHPLVVEDMandkELPKVNEYahYTFLILDvpehdd-------efaisKLYIVIgr 98  methanogenic archa...
Feature 1                    #   #     #        #  #       #  #   #     ##  #   ##      ##  # 
2HN2_A    137 nCVLMFQEKIgDVFDPVRERIrynrGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLErpekeTVQRTHQ 216 Thermotoga maritima
ACV48295  104 dWVVSVSPGAgSAVDRVRHAVeredERLLQHGADFTAYRVIEVVVDDYFEVLDRVEDLIEAIEDEVIDspdreTLERINA 183 Halomicrobium muko...
EHB59888  105 gWLVTVEPERlPALDAVWERVgrddPRLLSYGADFTAYRGIDRIVDDYYGILDEIEDDIEAVEDEVMDatgedVLARINS 184 Halobacterium sp. DL1
CBX01458  137 kLLLTFRESGkYNLSSIYQRLngehSLTREYGSDYLTYLIMDYIVDDYFNFVETSAQLLETLEDQLIKkpetiKLQTLYT 216 Legionella pneumop...
ADN35781  140 dTIITFLENDdRIFEPLIRRLtaskGRLRKNGNDYLFYAIIDSVVDEYFEIFEIIGERLERIEDSVIIspepeILEDIYS 219 Methanoplanus petr...
ACV68329  131 dVLLTFQEGGrDIFTPLHARLakpsSRLRQRDLDYLVYSLLDTVVDSYFSLMETLGQHIEDIEEQILNspdrdIRLTLQN 210 Desulfohalobium re...
ABD40719  140 kLLISISETS-NPFENIKTRIslpnGKFRTHDVDYLMYSIIDSVVDTYFFGLERIEDLSEKLEERVVHdpnsdIIIEIQS 218 Methanospirillum h...
CAJ35645  100 dFLISASDHW-DTIRTAETGLinkaGIISESGPDFLAYTLLDHATDHFYPVLDRLEDLIEEIEDEAMAtpgkeLLSKMAD 178 uncultured methano...
AAB90452  136 nLVATFEEREyWILDSIRSRLks-gGRMRKLAGDYLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSgd-stLIGKIHS 213 Archaeoglobus fulg...
BAI62823   99 dFLISLTGNW-DVLRAVDATLnskdDPIQKHGIDYLAYALIDRSVDRFYPILDDLEDLVSDVEERVMGkpakeIIGTISE 177 methanogenic archa...
Feature 1      ##  #   #                     #   ## ##  ## ##  ## ## ###  ######## ###########
2HN2_A    217 LKRNLVELRKTIWPLREVLSSLYRDvpplieKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKV 296 Thermotoga maritima
ACV48295  184 VRRDLLSFRKQIWPAREAVGVLARGdppqvqPQTEKYFRDVYDHLVQLADLTETYRDLVSGARDIYLNALSQSTNEVMKT 263 Halomicrobium muko...
EHB59888  185 LRRDLLSVRRLLWPTRDAVGALARGdpeqveEHTEKFYRDVYDHLVQLVDLAETYRDLTSGARDIYLNALSMSTNEVMKT 264 Halobacterium sp. DL1
CBX01458  217 IKRRTITLRKIIPPLRDIVHLLLTDdgglinKKYNLYFRDLYDHCIRLVESIDLHREMSASMLDIYLSTINNRMNESMKI 296 Legionella pneumop...
ADN35781  220 VRRDLIWLRKSIWPLRDVVAQLSRGeyylisDNTEIFLRDVHDHLSQISETLETYRDLAAGLLDLYLSGVSNRMNEVMKV 299 Methanoplanus petr...
ACV68329  211 MRASTLRIRRIVWPLREILSDLLRDpretfqDEVHSYLRDVYDHVIQSIDMLDIHRDMLASLFDLHLSGVSLRMNQIMQM 290 Desulfohalobium re...
ABD40719  219 FRHTLIKFKRQVWSLRDVIMHLERSdsdfltDSTRIFMRDVYDHVIKISEDLDIHREMAEGIMEIYLSSVSNRTNEIVRV 298 Methanospirillum h...
CAJ35645  179 VRKSLLTLRKSAWQIRNVVNDLSRGaspfiaPTTLIYIRDIDDHVTQVMDLIETYRDILTSSRDVYMSAVSVSLNQIMKQ 258 uncultured methano...
AAB90452  214 LKREILAFRNAVWPLRDVLSFFTRVeheligEEVKVYYRDVYDHAVRLMEVLETQRELLVSLRDLFLSAVSNKLNEIMKV 293 Archaeoglobus fulg...
BAI62823  178 VRRFLLKIRKAAWLDREVLSALERQgspyftSETALYLRDVYDHIVQVMDLIETYRDILGAARDTYMSSVSNALNETMKQ 257 methanogenic archa...
Feature 1     ## ### ###### ########                ##  ##  #          #  #   
2HN2_A    297 LTIIATIFMPLTFIAGIYGMNFEy------MPELRWKWGYPVVLAVMgviAVIMVVYFKKKKWL 354 Thermotoga maritima
ACV48295  264 LTVVATIFIPLTFVAGVYGMNFDpaaspynMPELGWAYGYPAVLVAMaliGVAMLAYFRRQDYL 327 Halomicrobium mukohataei DSM 12286
EHB59888  265 LTVVATIILPLTFVAGIYGMNFDggp--wnMPELGWQMGYPAVMLGMalmAAILVGYFRRENWL 326 Halobacterium sp. DL1
CBX01458  297 LTLFASIFIPLSFIAGVYGMNFKf------MPELDWRYGYPMILVTMvllAILMLYFFKRKKLF 354 Legionella pneumophila 130b
ADN35781  300 LTIIATIFIPLTFIAGLYGMNFSy------MPELNHPYAYPGVLLIMlaiAVAMLIYFRKKRWL 357 Methanoplanus petrolearius DSM 11571
ACV68329  291 LTLVATIFIPLSFVAGVYGMNFEy------MPELGWEWGYFAVLLSMgglAGVMLWVFKRRGWW 348 Desulfohalobium retbaense DSM 5692
ABD40719  299 LTVIAVIFIPLTFLTGVYGMNFSy------LPGIDHPAGPIIIFGIMiliTTSMAAIFRWKKWI 356 Methanospirillum hungatei JF-1
CAJ35645  259 LTIIATIMLPLSFIVGVYGMNFKn------MPELYWEYGYYTVWVIIisvTLIMLAYFRAKKWI 316 uncultured methanogenic archaeon RC-I
AAB90452  294 LTMIATIFIPLSFIAGVYGMNFKy------MPELEWKYGYPAVLTVMaviALVMIAFFRRKGWL 351 Archaeoglobus fulgidus DSM 4304
BAI62823  258 LTIIATLMLPLTFISSIYGMNFKn------MPELYWEYGYYAVLVIMfllASGMIIYFRKREWL 315 methanogenic archaeon SANAE

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