2V3U,2V3T


Conserved Protein Domain Family
PBP2_iGluR_delta_2

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cd13731: PBP2_iGluR_delta_2 
Click on image for an interactive view with Cn3D
The ligand-binding domain of an orphan ionotropic glutamate receptor delta-2, a member of the type 2 periplasmic-binding fold protein superfamily.
This group contains the ligand-binding domain of the delta-2 receptor of an orphan glutamate receptor family. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of delta receptors belongs to the periplasmic-binding fold type I. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetical analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans.
Statistics
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PSSM-Id: 270449
Aligned: 14 rows
Threshold Bit Score: 478.756
Created: 15-Nov-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2V3U; the ligand-binding domain Of iGluR-delta2 binds D-serine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #                       
2V3U_A          2 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 81   Norway rat
Q68Y21        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhKYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
2V3T_A          2 GVVLRVVTVLEEPFVXVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 81   Norway rat
Q61625        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 519  house mouse
EAX06044      355 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 434  human
O43424        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 519  human
Q63226        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhKYGSPQedGTWNGLVGELVFKRADI 519  Norway rat
XP_002193226  440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLEALATYLGFKYEIYVAPdhKYGSPQedGSWNGLIGELVFKRADI 519  zebra finch
NP_001004123  440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhKYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
AAI62459      440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhKYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
Feature 1            ###    #            #                                                        
2V3U_A         82 GISALTITPDRENVVDFTTRYMDYSVGVLLRRGT---------------------------------------------- 115  Norway rat
Q68Y21        520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
2V3T_A         82 GISALTITPDRENVVDFTTRYXDYSVGVLLRRGT---------------------------------------------- 115  Norway rat
Q61625        520 GISALTITPDRENVVDFTTRYMDYSVGVLLRRAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 599  house mouse
EAX06044      435 GISALTITPDRENVVDFTTRYMDYSVGVLLRRAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 514  human
O43424        520 GISALTITPDRENVVDFTTRYMDYSVGVLLRRAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 599  human
Q63226        520 GISALTITPDRENVVDFTTRYMDYSVGVLLRRAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 599  Norway rat
XP_002193226  520 GISALTITPDRENVVDFTTRYMDYSVGVLLRKAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 599  zebra finch
NP_001004123  520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
AAI62459      520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
Feature 1                                                                                         
2V3U_A        116 ----------------------------------------------------------------SIQSLQDLskqtdIPY 131  Norway rat
Q68Y21        600 vssttlynsmwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytanlaafltisrienSIQSLQDLakqtdLPY 679  zebrafish
2V3T_A        116 ----------------------------------------------------------------SIQSLQDLskqtdIPY 131  Norway rat
Q61625        600 mtsttlynsmwfvygsfvqqggevpyttlatrmmmgawwlfalivissytanlaafltitriesSIQSLQDLskqtdIPY 679  house mouse
EAX06044      515 mtsttlynsmwfvygsfvqqggevpyttlatrmmmgawwlfalivissytanlaafltitriesSIQSLQDLskqteIPY 594  human
O43424        600 mtsttlynsmwfvygsfvqqggevpyttlatrmmmgawwlfalivissytanlaafltitriesSIQSLQDLskqteIPY 679  human
Q63226        600 mtsttlynsmwfvygsfvqqggevpyttlatrmmmgawwlfalivissytanlaafltitriesSIQSLQDLskqtdIPY 679  Norway rat
XP_002193226  600 mtsttlynsmwfvygsfvqqggevpyttlatrlmmgawwlfalivissytanlaafltitrienSIQSLQDLsrqtdIPY 679  zebra finch
NP_001004123  600 vssttlynsmwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytanlaafltisrienSIQSLQDLakqtdLPY 679  zebrafish
AAI62459      600 vssttlynsmwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytanlaafltisrienSIQSLQDLakqtdLPY 679  zebrafish
Feature 1              ###                                                     ##                 
2V3U_A        132 GTVLDSAVYQHVRmkglnpferdsmysqmwrminrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 211  Norway rat
Q68Y21        680 GTVLDSAVYDQVRskgmnpferdpmysqmwrminrtggaENNVEESKEGIRKVKYGRFAFVWDAAVLEYVAINdedCSLY 759  zebrafish
2V3T_A        132 GTVLDSAVYQHVRxkglnpferdsxysqxwrxinrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 211  Norway rat
Q61625        680 GTVLDSAVYQHVRmkglnpferdsmysqmwrminrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 759  house mouse
EAX06044      595 GTVLDSAVYEHVRmkglnpferdsmysqmwrminrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 674  human
O43424        680 GTVLDSAVYEHVRmkglnpferdsmysqmwrminrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 759  human
Q63226        680 GTVLDSAVYQHVRmkglnpferdsmysqmwrminrsngsENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINdpdCSFY 759  Norway rat
XP_002193226  680 GTVLDSAVYEHVRvkgmnpferdsmysqmwrminrsngsENNVLESTAGIQKVKYGNYAFVWDAAVLEYVAINdaeCSFY 759  zebra finch
NP_001004123  680 GTVLDSAVYDQVRskgmnpferdpmysqmwrminrtggaENNVEESKEGIRKVKYGRFAFVWDAAVLEYVAINdedCSLY 759  zebrafish
AAI62459      680 GTVLDSAVYDQVRskgmnpferdpmysqmwrminrtggaENNVEESKEGIRKVKYGRFAFVWDAAVLEYVAINdedCSLY 759  zebrafish
Feature 1                                                        
2V3U_A        212 TVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWP 258  Norway rat
Q68Y21        760 TVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish
2V3T_A        212 TVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKWWP 258  Norway rat
Q61625        760 TVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWP 806  house mouse
EAX06044      675 TIGntVADRGYGIALQHGSPYRDVFSQRILELQQNGDMDILKHKWWP 721  human
O43424        760 TIGntVADRGYGIALQHGSPYRDVFSQRILELQQNGDMDILKHKWWP 806  human
Q63226        760 TVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWP 806  Norway rat
XP_002193226  760 TVGntVADRGYGIALQHGSPYRDVFSQRILELQQNGDMDVLKHKWWP 806  zebra finch
NP_001004123  760 TVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish
AAI62459      760 TVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish

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