Conserved Protein Domain Family
SMN

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pfam06003: SMN 
Survival motor neuron protein (SMN)
This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.
Statistics
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PSSM-Id: 428716
Aligned: 3 rows
Threshold Bit Score: 355.464
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
OCA51728  17 GQSDDSDIWDDTALIKAYDKAVSSFKKALKNGDCTVSAEAEekIPRTKRKNNKKNRSRKKCNAAPLKKwrVGDTCNAIWS 96 
Q6P934    15 GQSDDSDIWDDTALIKAYDKAVASFKNALKGEDGATPQEND--NPGKKRKNNKKNKSRKRCNAAPDKE--VGDSCYAFWS 90  zebrafish
Q98SU9    12 GQSDDSDMWDDTALIKAYDKAVASFKNALKNGDCSEPSDKQeqRAGVKRKNSKKNRNRNKSNAVPLKQwkVGDSCNAVWS 91  chicken
OCA51728  97 EDGNIYPATISSIDAKKGTCIVVYSGYGNSEEQSLADLRFPDTSeaESDQREQGQELNGDEHSTDESDRSS-----RSPQ 171
Q6P934    91 EDGNLYTATITSVDQEKGTCVVFYTDYGNEEEQNLSDLLTEPPD--MDEDALKTANVKETESSTEESDRSFtpqksGHAK 168 zebrafish
Q98SU9    92 EDGNVYPATIASINLKRGTCVVTYTGYGNKEEQNLADLLPPASD---------ETNENETPYSTDESEKSS-----QSHH 157 chicken
OCA51728 172 CKDSQNREIPKSSqWNGQFPPVPPPFMPGF----GRHGEKLdqaHPFLSGWPPPFLPGPPMIPPPPPMSPDACEDDEALG 247
Q6P934   169 HKSKSNFPMGPPS-WFPSFPPGPPPPPPHFkkmdGRRGEGP---GPSFPGWPPMIPLGPPMIPPPPPMSPDFGEDDEALG 244 zebrafish
Q98SU9   158 NEN--NCTKARFSpKNLRFPIPP--TPPGL----GRHGSKFrtlPPFLSCWPPPFPAGPPLIPPPPPMGPDSPEDDEALG 229 chicken
OCA51728 248 SMLIAWYMSGYHTGYYLGLKQGRMESSFGKSPHQK 282
Q6P934   245 SMLISWYMSGYHTGYYMGLRQGRKEAAASKKSHRK 279 zebrafish
Q98SU9   230 SMLIAWYMSGYHTGYYLGLKQSRMEAALEREAYLK 264 chicken
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