1YWL,1ZG2


Conserved Protein Domain Family
GIY-YIG_UPF0213

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cd10456: GIY-YIG_UPF0213 
Click on image for an interactive view with Cn3D
The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1
This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.
Statistics
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PSSM-Id: 198403
Aligned: 145 rows
Threshold Bit Score: 72.8292
Created: 4-Aug-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activeputative metalGIY-YIG
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity to the sequence of Enterobacteria phage T4 homing endonuclease I-Tevi (1LN0).
  • Comment:The last conserved motif (invariant Asn residue) of GIY-YIG homing endonuclease I-TevI (1LN0) is completely absent in the family members.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #         # #       #   #                                   #       
1YWL_A         7 HYFYVLLCqDGSFYGGYTtEPERRLTEHNSGt-GAKYTRlakrrPVIMIHTEKFETrsEATKAEAAFKKLT 76  Enterococcus faecalis
ABQ03290       4 YYVYILKCsDNSYYTGFTnNIERRLNEHNSGinKECYTFnk--rPLELVFYAEFNDvhQAIAFEKQVKGWS 72  Flavobacterium johnsonia...
YP_004343222   4 LYVYILECsDGSYYTGITnNLTRRLEQHQSGknPDSYTFsr--rPVEMVFYAEFTDfyYAIDKEKQIKRWS 72  Fluviicola taffensis DSM...
ZP_01252151    4 YYVYILKCsDDSFYTGMTnDLERRFEEHRYGhnKLAYTFnk--rPLELKFFETFNDvdQAFYFERKIKKWS 72  Psychroflexus torquis AT...
YP_004579733   4 YYVYILKCsDGLTYTGIKnNISRRFEEHQNGlnKTCFTYkk--rPLILIFQQEFNNveQAIYFEKKIKKWS 72  Lacinutrix sp. 5H-3-7-4
ACY23321       3 AHMYILECsDGSFYVGSTrNLDERIAQHLSGr-GSAYTSrr--mPVKLVYSAEFEHigEAYAAEKRVQGWS 70  Gordonia bronchialis DSM...
ZP_08203208    3 GFMYILRCaDDSYYVGSTrNLEARISQHMDGv-GAAYTRrr--rPVTLVFVEEFDTvaEAYEMEKRVQGWS 70  Gordonia sp. AD-6
ADQ16467       3 GYMYILKCsDDSYYTGSTtNLELRLAQHQNGe-GANYTKkr--lPVTLVYYEEFNRidKAFYREKQVQGWS 70  Leadbetterella byssophil...
YP_001735976   2 PHMYILECaDGSFYTGSTkDLERRLWQHQNGq-GANHTKkr--lPVKLVYAEYYDHvaNAFYREKQVQGWS 69  Synechococcus sp. PCC 7002
YP_001953737   2 PYMYILECaDGSYYTGSTwNLEKRLWEHQQGi-GARHTAkr--lPVKLLYCEEYARidEAYFREKQVQGWG 69  Geobacter lovleyi SZ

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