Conserved Protein Domain Family
Rab15

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cd04117: Rab15 
Rab GTPase family 15 (Rab15)
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Statistics
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PSSM-Id: 206698
Aligned: 4 rows
Threshold Bit Score: 320.001
Created: 9-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on sequence similarity with other Rab isoforms.
  • Comment:The active conformation of Rab is stabilized by interations between the gamma phosphate of GTP and two critically conserved residues, Thr in switch I and Gly in switch II

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #######         #     ##                         #                      
AAH40679       9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 88  human
CAH69068       9 FRLLLLGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTLEIDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 88  zebrafish
NP_001016372   9 FRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 88  western clawed ...
P59190         9 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 88  human
Feature 1                                        ## #                           ###              
AAH40679      89 DISSERSYQHIMKWVSDVDEVgd-aTSLPGCGEGASPGKARRGPDGKANASRKLClpqPWMKTSGThQKASRRSLLGIRL 167 human
CAH69068      89 DITSERSFQHIMKWASDVDEYapekVQKILVGNKSDEQEKRQVATEQGDKLAKAYg-mDFFETSAFtNHNITESFTRLAE 167 zebrafish
NP_001016372  89 DITSERSYQHIMKWASDVDEYapdgVQKILIGNKADEEQKRQVGKNQGMKLAEEYg-mDFFETSACtNYNIKESFTRLTE 167 western clawed ...
P59190        89 DISSERSYQHIMKWVSDVDEYapegVQKILIGNKADEEQKRQVGREQGQQLAKEYg-mDFYETSACtNLNIKESFTRLTE 167 human
Feature 1             
AAH40679     168 MRSRN 172 human
CAH69068     168 LVLQA 172 zebrafish
NP_001016372 168 LVLMA 172 western clawed frog
P59190       168 LVLQA 172 human

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