2VIK,1YAG,1RGI,1JHW,2FGH


Conserved Protein Domain Family
gelsolin_S1_like

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cd11290: gelsolin_S1_like 
Click on image for an interactive view with Cn3D
Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin_like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins.
Statistics
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PSSM-Id: 200446
Aligned: 33 rows
Threshold Bit Score: 141.592
Created: 25-Aug-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: putative type 1 Ca binding site [ion binding site], 1 residue position
Conserved feature residue pattern:DClick to see conserved feature residue pattern help
Evidence:
  • Comment:Activated actin-bound gelsolin has eight Ca2+-binding sites: six type-2 sites, one per sub-domain, and two type 1 sites, associated with the first and the fourth sub-domain; type 1 binding sites share co-ordination of Ca2+ with actin
  • Comment:not all members of this subfamily may bind calcium at this site
  • Structure:1RGI: the first sub-domain of horse gelsolin binds Ca2+ in its type 1 binding site, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        #
2VIK_A          8 TGKLDKttPGIQIWRIENMEMVPVPTKsYGNFYEGDCYVLLSTRKtg--sgFSYNIHYWLGKNSSQDEQGAAAIYTTQMD 85   chicken
1RGI_G          7 FLKAGKe-PGLQIWRVEKFDLVPVPPNlYGDFFTGDAYVILKTVQlrn-giLQYDLHYWLGNECSQDESGAAAIFTVQLD 84   horse
NP_002009     492 TEDVGQl-PGLTIWQIENFVPVLVEEAfHGKFYEADCYIVLKTFLdds-gsLNWEIYYWIGGEATLDKKACSAIHAVNLR 569  human
NP_001025806  491 SEDVGQl-PGLSIWQIENFVPTLVDDAfYGKFYEADCYIVLKTFLden-gsLSWEIYYWIGQEATLDKKACSAIHAVNLR 568  chicken
NP_001086319  493 TEDVGQi-PGVTVWQIENFIPTQVEETfYGRFYEADCYIVLKTYLdsl-gaLHWEIYYWIGQEATLDKKACSAIHAVNLR 570  African clawe...
AAC28407      490 EKDDGQl-PGLTIWEIENFLPNKIEEVvHGKFYEGDCYIVLKTKFddl-glLDWEIFFWIGNEATLDKRACAAIHAVNLR 567  fruit fly
CAF96381        7 FTTAGKk-PGLQVWRIENLDLKPIPEAlRGSFYTGDAYLLLYTTAa-----PSYSIHMWLGAECSQDESGAAAIFAMQLD 80   spotted green...
O61270          7 IQKAGKe-TGIQIWRIEDFELVPVPKTnHGKFYTGDSYIILKTTAlesgrgFEWNLHYWQGKESSQDERGAVAILAVKMD 85   Halocynthia r...
CAG02555      529 LEEVGQv-PGVTVWQIENFLPLQVDETfHGKFYEADCYIILKTSLddn-gaLNWQIFYWIGQEATLDKKACSAIHAVNLR 606  spotted green...
NP_498913     501 DEDVGSd-EGMWVWEIENFYPSIMDEAfHGQFYDADAYLVLKTTReas-gqLRHAIFYWLGEHASLDKGMCSAVHAVGLR 578  nematode
Feature 1                                            
2VIK_A         86 EYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG 120  chicken
1RGI_G         85 DYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG 119  horse
NP_002009     570 NYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG 604  human
NP_001025806  569 NYLGAECRCIREEMGDESDEFLQVFDNDISYIEGG 603  chicken
NP_001086319  571 NYLGAEGRTIREEMGDESEEFSQVFYNDITYIEGG 605  African clawed frog
AAC28407      568 NFLGARCRTVREEQGDESEQFLSLFETEVIYIEGG 602  fruit fly
CAF96381       81 DHLGGKPVQFREVQDHESKTFLGYFKSGVVYQKGG 115  spotted green pufferfish
O61270         86 DHLNGGPVEHREVQGNESAAFKGLFPTITYLIGGV 120  Halocynthia roretzi
CAG02555      607 NCLGAEGRTIREEMGDESEEFSAVRHQHSIEIRTH 641  spotted green pufferfish
NP_498913     579 NHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGG 613  nematode

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