3KMU,3KMW,2VZC,2K2R


Conserved Protein Domain Family
CH_PARVA_rpt2

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cd21337: CH_PARVA_rpt2 
second calponin homology (CH) domain found in alpha-parvin
Alpha-parvin, also called actopaxin, calponin-like integrin-linked kinase-binding protein (CH-ILKBP), or matrix-remodeling-associated protein 2, plays a role in sarcomere organization and in smooth muscle cell contraction. It is required for normal development of the embryonic cardiovascular system, and for normal septation of the heart outflow tract. It is also involved in the reorganization of the actin cytoskeleton, the formation of lamellipodia and ciliogenesis, as well as in the establishement of cell polarity, cell adhesion, cell spreading, and directed cell migration. Alpha-parvin contains two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409186
Aligned: 10 rows
Threshold Bit Score: 226.029
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative actin
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #   #                                                     # 
3KMU_B         2 SHX-DAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLXGLLEGYFVPLHSFFLTPDSFEQK 80  human
3KMW_B         2 SHM-DAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK 80  human
2VZC_A         3 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK 82  human
KFP58960      67 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK 146 turkey vulture
XP_006001040 244 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHNFYLTPDSFEQK 323 coelacanth
XP_007886013 244 RHErDAFDTLFDHAPDKLSVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLVEDYFVPLHNFYLTPDSFEHK 323 elephant shark
NP_001002872 244 RHErDAFDTLFDHAPDKLSVVKKTLITFVNKHLNKLNLEVAELDTQFADGVYLVLLMGLLEGYFVPLYNFFLTPENFDQK 323 zebrafish
2K2R_A         1 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK 80  unidentified
Q9NVD7       244 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQK 323 human
OCA15294     122 RHErDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLFNFFLTPDSFEQK 201 tropical clawed...
Feature 1        ##  ## #        #########    # ## ##  ##  #      
3KMU_B        81 VLNVSFAFELXQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 129 human
3KMW_B        81 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 129 human
2VZC_A        83 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 131 human
KFP58960     147 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNME 195 turkey vulture
XP_006001040 324 VHNVSFSFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 372 coelacanth
XP_007886013 324 VHNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 372 elephant shark
NP_001002872 324 VHNVSFSFELMQDGGMERPKPRPEDIVNCNLKSTLRVIYNLFTRYRNVE 372 zebrafish
2K2R_A        81 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 129 unidentified
Q9NVD7       324 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE 372 human
OCA15294     202 VLNVTFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRSVE 250 tropical clawed frog

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