"Labcorp Genetics (formerly Invitae), Labcorp"[submitter] AND "ATL1"[g - ClinVar - NCBI

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	Variation	Gene (Protein Change)	Type (Consequence)	Condition	Classification, Review status
Select item 2094997	NM_015915.5(ATL1):c.22A>C (p.Arg8=)	ATL1, MAP4K5	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2969762	NM_015915.5(ATL1):c.26A>G (p.Asn9Ser)	ATL1, MAP4K5 (N9S)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 538580	NM_015915.5(ATL1):c.27C>G (p.Asn9Lys)	ATL1, MAP4K5 (N9K)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GConflicting classifications of pathogenicity
Select item 471249	NM_015915.5(ATL1):c.30T>C (p.Ser10=)	ATL1, MAP4K5	Single nucleotide variant (synonymous variant)	not specified +3 more	GBenign/Likely benign
Select item 1416672	NM_015915.5(ATL1):c.33G>C (p.Trp11Cys)	ATL1, MAP4K5 (W11C)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 2009060	NM_015915.5(ATL1):c.34+3G>C	ATL1, MAP4K5	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 964756	NM_015915.5(ATL1):c.34+4A>G	ATL1, MAP4K5	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2903710	NM_015915.5(ATL1):c.34+6T>G	ATL1, MAP4K5	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1663913	NM_015915.5(ATL1):c.34+10A>G	ATL1, MAP4K5	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2969844	NM_015915.5(ATL1):c.34+16G>T	ATL1, MAP4K5	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1962471	NM_015915.5(ATL1):c.34+16G>C	MAP4K5, ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 513999	NM_015915.5(ATL1):c.34+16G>A	ATL1, MAP4K5	Single nucleotide variant (intron variant)	not specified +1 more	GLikely benign
Select item 1619719	NM_015915.5(ATL1):c.35-20G>T	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2790222	NM_015915.5(ATL1):c.35-16C>T	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2169217	NM_015915.5(ATL1):c.35-15T>C	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 516491	NM_015915.5(ATL1):c.35-14G>A	ATL1	Single nucleotide variant (intron variant)	not specified +3 more	GBenign
Select item 1624589	NM_015915.5(ATL1):c.35-11C>A	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1623695	NM_015915.5(ATL1):c.35-10T>C	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2105144	NM_015915.5(ATL1):c.35-8T>C	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1015186	NM_015915.5(ATL1):c.35-3C>T	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2698667	NM_015915.5(ATL1):c.35-1G>A	ATL1	Single nucleotide variant (splice acceptor variant)	Hereditary spastic paraplegia 3A	GLikely pathogenic
Select item 1909951	NM_015915.5(ATL1):c.35G>A (p.Gly12Asp)	ATL1 (G12D)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1405404	NM_015915.5(ATL1):c.38G>C (p.Gly13Ala)	ATL1 (G13A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1431090	NM_015915.5(ATL1):c.44C>T (p.Ser15Leu)	ATL1 (S15L)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GConflicting classifications of pathogenicity
Select item 697332	NM_015915.5(ATL1):c.45G>A (p.Ser15=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 538578	NM_015915.5(ATL1):c.46G>C (p.Glu16Gln)	ATL1 (E16Q)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2770302	NM_015915.5(ATL1):c.48A>C (p.Glu16Asp)	ATL1 (E16D)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 3013724	NM_015915.5(ATL1):c.54A>G (p.Thr18=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2011412	NM_015915.5(ATL1):c.55T>A (p.Tyr19Asn)	ATL1 (Y19N)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1141418	NM_015915.5(ATL1):c.60A>G (p.Glu20=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 941896	NM_015915.5(ATL1):c.61T>C (p.Trp21Arg)	ATL1 (W21R)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2151969	NM_015915.5(ATL1):c.70G>C (p.Glu24Gln)	ATL1 (E24Q)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GConflicting classifications of pathogenicity
Select item 21534	NM_015915.5(ATL1):c.84A>G (p.Pro28=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia +4 more	GBenign
Select item 1491035	NM_015915.5(ATL1):c.86T>C (p.Val29Ala)	ATL1 (V29A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 700720	NM_015915.5(ATL1):c.90A>G (p.Lys30=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GBenign
Select item 2908843	NM_015915.5(ATL1):c.111C>A (p.Val37=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2016923	NM_015915.5(ATL1):c.114C>T (p.Leu38=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1496727	NM_015915.5(ATL1):c.115A>G (p.Ile39Val)	ATL1 (I39V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1057884	NM_015915.5(ATL1):c.125A>T (p.Asp42Val)	ATL1 (D42V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2906833	NM_015915.5(ATL1):c.126T>C (p.Asp42=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1518298	NM_015915.5(ATL1):c.133T>G (p.Ser45Ala)	ATL1 (S45A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1112712	NM_015915.5(ATL1):c.135C>T (p.Ser45=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 578957	NM_015915.5(ATL1):c.163C>T (p.Arg55Trp)	ATL1 (R55W)	Single nucleotide variant (missense variant)	not provided +2 more	GUncertain significance
Select item 471248	NM_015915.5(ATL1):c.164G>A (p.Arg55Gln)	ATL1 (R55Q)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +2 more	GUncertain significance
Select item 646564	NM_015915.5(ATL1):c.176C>T (p.Ser59Leu)	ATL1 (S59L)	Single nucleotide variant (missense variant)	Inborn genetic diseases +1 more	GUncertain significance
Select item 2727357	NM_015915.5(ATL1):c.177G>A (p.Ser59=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1657272	NM_015915.5(ATL1):c.177G>C (p.Ser59=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1441421	NM_015915.5(ATL1):c.178G>C (p.Glu60Gln)	ATL1 (E60Q)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2133976	NM_015915.5(ATL1):c.179A>C (p.Glu60Ala)	ATL1 (E60A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1935952	NM_015915.5(ATL1):c.182C>T (p.Ala61Val)	ATL1 (A61V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2723402	NM_015915.5(ATL1):c.192C>T (p.Asp64=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1038114	NM_015915.5(ATL1):c.196G>A (p.Glu66Lys)	ATL1 (E66K)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 30580	NM_015915.5(ATL1):c.196G>C (p.Glu66Gln)	ATL1 (E66Q)	Single nucleotide variant (missense variant)	Inborn genetic diseases +2 more	GConflicting classifications of pathogenicity
Select item 1082137	NM_015915.5(ATL1):c.200T>C (p.Val67Ala)	ATL1 (V67A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1055661	NM_015915.5(ATL1):c.206C>T (p.Ala69Val)	ATL1 (A69V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2785382	NM_015915.5(ATL1):c.249G>A (p.Leu83=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1494186	NM_015915.5(ATL1):c.254A>G (p.Asp85Gly)	ATL1 (D85G)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2065414	NM_015915.5(ATL1):c.261G>A (p.Met87Ile)	ATL1 (M87I)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 1948967	NM_015915.5(ATL1):c.268T>C (p.Tyr90His)	ATL1 (Y90H)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 2989808	NM_015915.5(ATL1):c.271A>G (p.Met91Val)	ATL1 (M91V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2009783	NM_015915.5(ATL1):c.271A>C (p.Met91Leu)	ATL1 (M91L)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1357552	NM_015915.5(ATL1):c.282G>C (p.Gln94His)	ATL1 (Q94H)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1006061	NM_015915.5(ATL1):c.282+4T>C	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2053218	NM_015915.5(ATL1):c.282+15C>T	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1628966	NM_015915.5(ATL1):c.282+15C>G	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2890546	NM_015915.5(ATL1):c.282+18T>G	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 3018655	NM_015915.5(ATL1):c.283-20T>C	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2703137	NM_015915.5(ATL1):c.283-20del	ATL1	Deletion (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2145518	NM_015915.5(ATL1):c.283-16C>G	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 862250	NM_015915.5(ATL1):c.293A>G (p.Asp98Gly)	ATL1 (D98G)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1023705	NM_015915.5(ATL1):c.298G>T (p.Val100Phe)	ATL1 (V100F)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 216696	NM_015915.5(ATL1):c.300T>G (p.Val100=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A +1 more	GConflicting classifications of pathogenicity
Select item 538585	NM_015915.5(ATL1):c.306C>A (p.Asp102Glu)	ATL1 (D102E)	Single nucleotide variant (missense variant)	Neuropathy, hereditary sensory, type 1D +3 more	GBenign/Likely benign
Select item 1727427	NM_015915.5(ATL1):c.308A>G (p.Tyr103Cys)	ATL1 (Y103C)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 450586	NM_015915.5(ATL1):c.311A>G (p.Asn104Ser)	ATL1 (N104S)	Single nucleotide variant (missense variant)	not provided +1 more	GConflicting classifications of pathogenicity
Select item 2831861	NM_015915.5(ATL1):c.317C>G (p.Pro106Arg)	ATL1 (P106R)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1078759	NM_015915.5(ATL1):c.318A>T (p.Pro106=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 377500	NM_015915.5(ATL1):c.322A>G (p.Thr108Ala)	ATL1 (T108A)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +2 more	GConflicting classifications of pathogenicity
Select item 2860253	NM_015915.5(ATL1):c.336G>A (p.Trp112Ter)	ATL1 (W112*)	Single nucleotide variant (nonsense)	Hereditary spastic paraplegia 3A	GPathogenic
Select item 1487401	NM_015915.5(ATL1):c.341G>T (p.Gly114Val)	ATL1 (G114V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2911757	NM_015915.5(ATL1):c.348T>C (p.Ser116=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 21530	NM_015915.5(ATL1):c.351G>A (p.Glu117=)	ATL1	Single nucleotide variant (synonymous variant)	Neuropathy, hereditary sensory, type 1D +3 more	GBenign
Select item 157549	NM_015915.5(ATL1):c.353G>A (p.Arg118Gln)	ATL1 (R118Q)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GConflicting classifications of pathogenicity
Select item 578005	NM_015915.5(ATL1):c.373A>G (p.Ile125Val)	ATL1 (I125V)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 2195111	NM_015915.5(ATL1):c.375A>G (p.Ile125Met)	ATL1 (I125M)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 639467	NM_015915.5(ATL1):c.388T>C (p.Phe130Leu)	ATL1 (F130L)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 1427572	NM_015915.5(ATL1):c.391C>T (p.Leu131Phe)	ATL1 (L131F)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 313293	NM_015915.5(ATL1):c.408T>C (p.Asp136=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A +2 more	GBenign/Likely benign
Select item 1407849	NM_015915.5(ATL1):c.409G>T (p.Gly137Cys)	ATL1 (G137C)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A +1 more	GUncertain significance
Select item 1718352	NM_015915.5(ATL1):c.412A>G (p.Lys138Glu)	ATL1 (K138E)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 313294	NM_015915.5(ATL1):c.417+3A>G	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A +3 more	GBenign/Likely benign
Select item 2156450	NM_015915.5(ATL1):c.418-19G>A	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 1174932	NM_015915.5(ATL1):c.418-19G>T	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A +2 more	GBenign
Select item 1968586	NM_015915.5(ATL1):c.418-14C>G	ATL1	Single nucleotide variant (intron variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2783078	NM_015915.5(ATL1):c.421G>T (p.Ala141Ser)	ATL1 (A141S)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance
Select item 1663854	NM_015915.5(ATL1):c.426G>A (p.Val142=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 3002259	NM_015915.5(ATL1):c.444G>A (p.Gln148=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 2729439	NM_015915.5(ATL1):c.450C>A (p.Thr150=)	ATL1	Single nucleotide variant (synonymous variant)	Hereditary spastic paraplegia 3A	GLikely benign
Select item 410596	NM_015915.5(ATL1):c.461A>G (p.Gln154Arg)	ATL1 (Q154R)	Single nucleotide variant (missense variant)	Abnormal pyramidal sign +1 more	GConflicting classifications of pathogenicity
Select item 2862929	NM_015915.5(ATL1):c.463T>C (p.Ser155Pro)	ATL1 (S155P)	Single nucleotide variant (missense variant)	Hereditary spastic paraplegia 3A	GUncertain significance

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