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NM_000518.4(HBB):c.[20A>T;70G>A] AND HEMOGLOBIN S (ANTILLES)

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 1, 1997
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016576.8

Alleles description

NM_000518.5(HBB):c.20A>T (p.Glu7Val)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.20A>T (p.Glu7Val)
Other names:
E6V; HbS
HGVS:
  • NC_000011.10:g.5227002T>A
  • NG_000007.3:g.70614A>T
  • NG_042296.1:g.533T>A
  • NG_046672.1:g.4937T>A
  • NG_059281.1:g.5070A>T
  • NM_000518.5:c.20A>TMANE SELECT
  • NP_000509.1:p.Glu7Val
  • NP_000509.1:p.Glu7Val
  • LRG_1232t1:c.20A>T
  • LRG_1232:g.5070A>T
  • LRG_1232p1:p.Glu7Val
  • NC_000011.9:g.5248232T>A
  • NM_000518.4:c.20A>T
  • P68871:p.Glu7Val
Protein change:
E7V; Glu6Val
Links:
Genetic Testing Registry (GTR): GTR000115629; Genetic Testing Registry (GTR): GTR000500319; UniProtKB: P68871#VAR_002863; OMIM: 141900.0039; OMIM: 141900.0040; OMIM: 141900.0243; OMIM: 141900.0244; OMIM: 141900.0245; OMIM: 141900.0246; OMIM: 141900.0247; OMIM: 141900.0521; OMIM: 141900.0523; dbSNP: rs334
NCBI 1000 Genomes Browser:
rs334
Molecular consequence:
  • NM_000518.5:c.20A>T - missense variant - [Sequence Ontology: SO:0001583]

NM_000518.5(HBB):c.70G>A (p.Val24Ile)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.70G>A (p.Val24Ile)
Other names:
V23I
HGVS:
  • NC_000011.10:g.5226952C>T
  • NG_000007.3:g.70664G>A
  • NG_042296.1:g.483C>T
  • NG_046672.1:g.4887C>T
  • NG_059281.1:g.5120G>A
  • NM_000518.5:c.70G>AMANE SELECT
  • NP_000509.1:p.Val24Ile
  • LRG_1232t1:c.70G>A
  • LRG_1232:g.5120G>A
  • LRG_1232p1:p.Val24Ile
  • NC_000011.9:g.5248182C>T
  • NM_000518.4:c.70G>A
Protein change:
V24I; VAL23ILE
Links:
OMIM: 141900.0244; dbSNP: rs33929459
NCBI 1000 Genomes Browser:
rs33929459
Molecular consequence:
  • NM_000518.5:c.70G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN S (ANTILLES)
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036845OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 1997)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Hemoglobin S Antilles: a variant with lower solubility than hemoglobin S and producing sickle cell disease in heterozygotes.

Monplaisir N, Merault G, Poyart C, Rhoda MD, Craescu C, Vidaud M, Galacteros F, Blouquit Y, Rosa J.

Proc Natl Acad Sci U S A. 1986 Dec;83(24):9363-7.

PubMed [citation]
PMID:
3467311
PMCID:
PMC387138

Haemoglobin alpha 2 beta 2 23Val----Ile produced in Escherichia coli facilitates Hb S polymerization.

Pagnier J, Baudin-Chich V, Lacaze N, Bohn B, Poyart C.

Br J Haematol. 1990 Apr;74(4):531-4.

PubMed [citation]
PMID:
2189492
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000036845.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

This variant has electrophoretic mobility in standard conditions identical to that of Hb S but shows a slightly higher pI than Hb S on isoelectric focusing. Heterozygous carriers of this variant hemoglobin exhibit sickling disorders. This observation may provide a clue to the unexplained clinical sickling disorders in some A/S carriers, in whom careful biochemical analyses may reveal other examples of double mutations in the beta chain. See Monplaisir et al. (1986). Pagnier et al. (1990) introduced the val23-to-ile mutation into beta-globin cDNA by site-directed mutagenesis. The beta-globin chain was synthesized using an expression vector and hemoglobin tetramers were reconstituted. When mixed with equal amounts of hemoglobin S, facilitation of polymerization was observed. Pagnier et al. (1990) listed 5 other hemoglobin variants which contain both the sickle mutation and a second amino acid substitution in the same beta chain.

Popp et al. (1997) bred 2 homozygous viable Hb S Antilles transgene insertions into a strain of mice that produce hemoglobins with a higher affinity for oxygen than normal mouse Hb. The rationale was that the high oxygen affinity hemoglobin, the lower oxygen affinity of Hb S Antilles, and the lower solubility of deoxygenated Hb Antilles than Hb S would favor deoxygenation and polymerization of human Hb S Antilles in the red cells of the high oxygen affinity mice. The investigators found that the mice produced a high and balanced expression of human alpha and human beta (S Antilles) globins, that 25 to 35% of their RBCs were misshapen in vivo, and that in vitro deoxygenation of their blood induced 30 to 50% of the RBCs to form classic elongated sickle cells with pointed ends. The mice exhibited reticulocytosis, an elevated white blood cell count, and lung and kidney pathology commonly found in sickle cell patients, which should make these mice useful for experimental studies on possible therapeutic intervention of sickle cell disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 26, 2023