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NM_000518.4(HBB):c.[205C>T;20A>T] AND HEMOGLOBIN JAMAICA PLAIN

Germline classification:
other (1 submission)
Last evaluated:
Dec 12, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016879.5

Alleles description

NM_000518.5(HBB):c.20A>T (p.Glu7Val)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.20A>T (p.Glu7Val)
Other names:
E6V; HbS
HGVS:
  • NC_000011.10:g.5227002T>A
  • NG_000007.3:g.70614A>T
  • NG_042296.1:g.533T>A
  • NG_046672.1:g.4937T>A
  • NG_059281.1:g.5070A>T
  • NM_000518.5:c.20A>TMANE SELECT
  • NP_000509.1:p.Glu7Val
  • NP_000509.1:p.Glu7Val
  • LRG_1232t1:c.20A>T
  • LRG_1232:g.5070A>T
  • LRG_1232p1:p.Glu7Val
  • NC_000011.9:g.5248232T>A
  • NM_000518.4:c.20A>T
  • P68871:p.Glu7Val
Protein change:
E7V; Glu6Val
Links:
Genetic Testing Registry (GTR): GTR000115629; Genetic Testing Registry (GTR): GTR000500319; UniProtKB: P68871#VAR_002863; OMIM: 141900.0039; OMIM: 141900.0040; OMIM: 141900.0243; OMIM: 141900.0244; OMIM: 141900.0245; OMIM: 141900.0246; OMIM: 141900.0247; OMIM: 141900.0521; OMIM: 141900.0523; dbSNP: rs334
NCBI 1000 Genomes Browser:
rs334
Molecular consequence:
  • NM_000518.5:c.20A>T - missense variant - [Sequence Ontology: SO:0001583]

NM_000518.5(HBB):c.205C>T (p.Leu69Phe)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.205C>T (p.Leu69Phe)
Other names:
L68F
HGVS:
  • NC_000011.10:g.5226687G>A
  • NG_000007.3:g.70929C>T
  • NG_042296.1:g.218G>A
  • NG_046672.1:g.4622G>A
  • NG_053049.1:g.3008G>A
  • NG_059281.1:g.5385C>T
  • NM_000518.5:c.205C>TMANE SELECT
  • NP_000509.1:p.Leu69Phe
  • NP_000509.1:p.Leu69Phe
  • LRG_1232t1:c.205C>T
  • LRG_1232:g.5385C>T
  • LRG_1232p1:p.Leu69Phe
  • NC_000011.9:g.5247917G>A
  • NM_000518.4:c.205C>T
Protein change:
L69F; LEU68PHE
Links:
OMIM: 141900.0523; OMIM: 141900.0524; dbSNP: rs33961459
NCBI 1000 Genomes Browser:
rs33961459
Molecular consequence:
  • NM_000518.5:c.205C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN JAMAICA PLAIN
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000037149OMIM
no assertion criteria provided
other
(Dec 12, 2017)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Hemoglobin Jamaica plain--a sickling hemoglobin with reduced oxygen affinity.

Geva A, Clark JJ, Zhang Y, Popowicz A, Manning JM, Neufeld EJ.

N Engl J Med. 2004 Oct 7;351(15):1532-8.

PubMed [citation]
PMID:
15470216

Molecular analysis of the beta-thalassemia phenotype associated with inheritance of hemoglobin E (alpha 2 beta2(26)Glu leads to Lys).

Benz EJ Jr, Berman BW, Tonkonow BL, Coupal E, Coates T, Boxer LA, Altman A, Adams JG 3rd.

J Clin Invest. 1981 Jul;68(1):118-26.

PubMed [citation]
PMID:
6166632
PMCID:
PMC370779

Details of each submission

From OMIM, SCV000037149.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

Geva et al. (2004) described a girl of Puerto Rican descent who presented with symptomatic sickle cell disease exacerbated by mild hypoxemia, despite a newborn screening diagnosis of sickle cell trait. The child was found to be heterozygous for mutations in the HBB gene: the sickle cell mutation glu6 to val (G6V; 141900.0243), and a neutral leu68-to-phe (L68F; 141900.0524) mutation. Analysis of the patient's hemoglobin demonstrated that the doubly mutant protein, which the authors called hemoglobin Jamaica Plain (Hb JP) for Jamaica Plain, Massachusetts, had severely reduced oxygen affinity, especially in the presence of 2,3-diphosphoglycerate. Structural modeling suggested destabilization of the oxy conformation as a molecular mechanism for sickling in a heterozygote at an ambient partial pressure of oxygen. The patient's sickle cell disease was exacerbated by intercurrent respiratory infection, and she developed splenomegaly. The splenomegaly and anemia were recurrent. At the age of 19 months, during her first airplane trip, the child became acutely ill, with her spleen reaching the pelvic brim, as reported by a physician on board. After landing, she was hospitalized and found to have a hematocrit of 18%. Packed red cells were transfused; the hematocrit then rose to 28% with resolution of symptoms and a decrease in splenomegaly. Because of the apparent splenic sequestration crisis, a splenectomy was performed when she was 2 years old. Since that time, she had been asymptomatic and required no transfusions in the previous 24 months. In a commentary on the work of Geva et al. (2004), Benz (2004) noted that by itself, the L68F mutation is known as hemoglobin Rockford, a member of a class of 'low affinity hemoglobins' with reduced affinity for oxygen. These hemoglobins cause few symptoms, if any. When the L68F and G6V mutations coexist in the same beta-globin molecule, the L68F mutation causes Hb JP to desaturate easily and therefore to sickle more readily than ordinarily occurs with Hb S (G6V).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 26, 2023