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NM_001625.4(AK2):c.697A>T (p.Lys233Ter) AND Reticular dysgenesis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019923.27

Allele description [Variation Report for NM_001625.4(AK2):c.697A>T (p.Lys233Ter)]

NM_001625.4(AK2):c.697A>T (p.Lys233Ter)

Gene:
AK2:adenylate kinase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p35.1
Genomic location:
Preferred name:
NM_001625.4(AK2):c.697A>T (p.Lys233Ter)
HGVS:
  • NC_000001.11:g.33013204T>A
  • NG_016269.1:g.28688A>T
  • NM_001199199.3:c.670+3A>T
  • NM_001319139.3:c.550+3A>T
  • NM_001319140.2:c.553A>T
  • NM_001319141.3:c.694+3A>T
  • NM_001319142.3:c.568+3A>T
  • NM_001319143.2:c.*200A>T
  • NM_001625.4:c.697A>TMANE SELECT
  • NM_013411.5:c.694+3A>T
  • NP_001306069.1:p.Lys185Ter
  • NP_001616.1:p.Lys233Ter
  • LRG_133:g.28688A>T
  • NC_000001.10:g.33478805T>A
Protein change:
K185*; LYS233TER
Links:
OMIM: 103020.0012; dbSNP: rs267606646
NCBI 1000 Genomes Browser:
rs267606646
Molecular consequence:
  • NM_001319143.2:c.*200A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001199199.3:c.670+3A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319139.3:c.550+3A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319141.3:c.694+3A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319142.3:c.568+3A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_013411.5:c.694+3A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319140.2:c.553A>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001625.4:c.697A>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Reticular dysgenesis
Synonyms:
ALEUKOCYTOSIS; HEMATOPOIETIC HYPOPLASIA, GENERALIZED; RETICULAR DYSGENESIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009973; MedGen: C0272167; Orphanet: 33355; OMIM: 267500

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000040221OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2009)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Human adenylate kinase 2 deficiency causes a profound hematopoietic defect associated with sensorineural deafness.

Lagresle-Peyrou C, Six EM, Picard C, Rieux-Laucat F, Michel V, Ditadi A, Demerens-de Chappedelaine C, Morillon E, Valensi F, Simon-Stoos KL, Mullikin JC, Noroski LM, Besse C, Wulffraat NM, Ferster A, Abecasis MM, Calvo F, Petit C, Candotti F, Abel L, Fischer A, Cavazzana-Calvo M.

Nat Genet. 2009 Jan;41(1):106-11. doi: 10.1038/ng.278. Epub 2008 Nov 30.

PubMed [citation]
PMID:
19043416
PMCID:
PMC2612090

Details of each submission

From OMIM, SCV000040221.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a female with reticular dysgenesis (267500), Lagresle-Peyrou et al. (2009) identified a 5-kb deletion following nucleotide 633 (633del5kb), resulting in a lys-to-ter substitution at codon 233 (K233X). The patient was homozygous for this mutation. Two of her 3 unaffected sibs, and each of her unaffected parents, were carriers.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022