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NM_199334.5(THRA):c.134G>T (p.Ser45Ile) AND Congenital nongoitrous hypothyroidism 6

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 1, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000022800.24

Allele description [Variation Report for NM_199334.5(THRA):c.134G>T (p.Ser45Ile)]

NM_199334.5(THRA):c.134G>T (p.Ser45Ile)

Gene:
THRA:thyroid hormone receptor alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.1
Genomic location:
Preferred name:
NM_199334.5(THRA):c.134G>T (p.Ser45Ile)
Other names:
E403*
HGVS:
  • NC_000017.11:g.40077520G>T
  • NG_023345.1:g.20328G>T
  • NM_001190918.2:c.134G>T
  • NM_001190919.2:c.134G>T
  • NM_003250.6:c.134G>T
  • NM_199334.5:c.134G>TMANE SELECT
  • NP_001177847.1:p.Ser45Ile
  • NP_001177848.1:p.Ser45Ile
  • NP_003241.2:p.Ser45Ile
  • NP_955366.1:p.Ser45Ile
  • NC_000017.10:g.38233773G>T
Protein change:
S45I; GLU403TER
Links:
OMIM: 190120.0001; dbSNP: rs137853162
NCBI 1000 Genomes Browser:
rs137853162
Molecular consequence:
  • NM_001190918.2:c.134G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001190919.2:c.134G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003250.6:c.134G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_199334.5:c.134G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital nongoitrous hypothyroidism 6
Synonyms:
Congenital nongoitrous hypothryoidism 6
Identifiers:
MONDO: MONDO:0013757; MedGen: C3280817; Orphanet: 97927; OMIM: 614450

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044089OMIM
no assertion criteria provided
Pathogenic
(May 1, 2015)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A mutation in the thyroid hormone receptor alpha gene.

Bochukova E, Schoenmakers N, Agostini M, Schoenmakers E, Rajanayagam O, Keogh JM, Henning E, Reinemund J, Gevers E, Sarri M, Downes K, Offiah A, Albanese A, Halsall D, Schwabe JW, Bain M, Lindley K, Muntoni F, Vargha-Khadem F, Dattani M, Farooqi IS, Gurnell M, et al.

N Engl J Med. 2012 Jan 19;366(3):243-9. doi: 10.1056/NEJMoa1110296. Epub 2011 Dec 14. Erratum in: N Engl J Med. 2012 Oct 11;367(15):1474. Khadem, Faraneh Vargha [corrected to Vargha-Khadem, Faraneh].

PubMed [citation]
PMID:
22168587

Thyroid hormone resistance syndrome due to mutations in the thyroid hormone receptor α gene (THRA).

Tylki-Szymańska A, Acuna-Hidalgo R, Krajewska-Walasek M, Lecka-Ambroziak A, Steehouwer M, Gilissen C, Brunner HG, Jurecka A, Różdżyńska-Świątkowska A, Hoischen A, Chrzanowska KH.

J Med Genet. 2015 May;52(5):312-6. doi: 10.1136/jmedgenet-2014-102936. Epub 2015 Feb 10.

PubMed [citation]
PMID:
25670821

Details of each submission

From OMIM, SCV000044089.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a 6-year-old girl of white European origin with congenital nongoitrous hypothyroidism (CHNG6; 614450), Bochukova et al. (2012) performed whole-exome sequencing and identified a de novo heterozygous 1207G-T transversion in the THRA gene, resulting in a glu403-to-ter (E403X) substitution, predicted to cause premature termination with loss of the C-terminal alpha-helix. The mutation was not found in published normal genomes and exomes or in 200 ethnically matched control alleles. Functional analysis demonstrated that the mutant receptor did not activate a thyroid hormone-responsive reporter gene and mediated substantial repression of basal promoter activity, consistent with negligible binding of radiolabeled triiodothyronine to mutant TR-alpha. Coexpression studies showed that the E403X receptor strongly inhibited transcriptional activity by wildtype TR-alpha in a dominant-negative manner. Patient peripheral blood mononuclear cells demonstrated markedly reduced basal and triiodothyronine-induced expression of the thyroid hormone-responsive target gene KLF9 (602902) compared to wildtype. Two-hybrid interaction assays revealed strong recruitment of corepressors by E403X mutant TR-alpha, with failure of their hormone-dependent dissociation, and minimal triiodothyronine-dependent association with coactivator SRC1 (602691).

In a 14-year-old Polish girl with congenital nongoitrous hypothyroidism, Tylki-Szymanska et al. (2015) identified heterozygosity a c.1207G-T transversion (c.1207G-T, NM_199334) in the THRA gene, resulting in the E403X mutation. The mutation occurred de novo in the proband.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 17, 2024