GRCh38/hg38 17q21.31-21.32(chr17:46444520-46990403)x3 AND See cases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 12, 2011
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000053135.5

Allele description [Variation Report for GRCh38/hg38 17q21.31-21.32(chr17:46444520-46990403)x3]

GRCh38/hg38 17q21.31-21.32(chr17:46444520-46990403)x3

Genes:

ARL17A:ADP ribosylation factor like GTPase 17A [Gene - HGNC]
LOC130061031:ATAC-STARR-seq lymphoblastoid silent region 8620 [Gene]
LOC126862578:BRD4-independent group 4 enhancer GRCh37_chr17:45008344-45009543 [Gene]
GOSR2-DT:GOSR2 divergent transcript [Gene - HGNC]
NSF:N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Gene - OMIM - HGNC]
LOC121587598:Sharpr-MPRA regulatory region 11668 [Gene]
LOC112533644:Sharpr-MPRA regulatory region 12503 [Gene]
LOC121852935:Sharpr-MPRA regulatory region 3126 [Gene]
LOC125177492:Sharpr-MPRA regulatory region 3811 [Gene]
WNT3:Wnt family member 3 [Gene - OMIM - HGNC]
WNT9B:Wnt family member 9B [Gene - OMIM - HGNC]
LOC111589213:ZFP161 motif-containing MPRA enhancer 249 [Gene]
FAM215B:family with sequence similarity 215 member B [Gene - HGNC]
GOSR2:golgi SNAP receptor complex member 2 [Gene - OMIM - HGNC]
LINC01974:long intergenic non-protein coding RNA 1974 [Gene - HGNC]
MIR5089:microRNA 5089 [Gene - HGNC]
RPRML:reprimo like [Gene - HGNC]
LRRC37A2:leucine rich repeat containing 37 member A2 [Gene - OMIM - HGNC]

Variant type:

copy number gain

Cytogenetic location:

17q21.31-21.32

Genomic location:

Preferred name:

GRCh38/hg38 17q21.31-21.32(chr17:46444520-46990403)x3

HGVS:

NC_000017.11:g.(?_46444520)_(46990403_?)dup
NC_000017.10:g.(?_44485771)_(45067769_?)dup
NC_000017.9:g.(?_41841187)_(42422768_?)dup

Links:

dbVar: nssv580264; dbVar: nsv531823

Observations:

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000080491	ISCA site 14 See additional submitters International Standards For Cytogenomic Arrays Consortium (ISCA)	criteria provided, single submitter (Kaminsky et al. (Genet Med. 2011))	Uncertain significance (Aug 12, 2011)	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000080491

ISCA site 14

See additional submitters

criteria provided, single submitter

(Kaminsky et al. (Genet Med. 2011))

Uncertain significance
(Aug 12, 2011)

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A, Mulle JG, Warren ST, Richard G, Compton JG, Fuller AE, Gliem TJ, Huang S, Collinson MN, Beal SJ, Ackley T, Pickering DL, Golden DM, Aston E, Whitby H, et al.

Genet Med. 2011 Sep;13(9):777-84. doi: 10.1097/GIM.0b013e31822c79f9.

PubMed [citation]

PMID:: 21844811
PMCID:: PMC3661946

Details of each submission

From ISCA site 14, SCV000080491.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided

Last Updated: May 7, 2024

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