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NM_182476.3(COQ6):c.622G>C (p.Asp208His) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jan 23, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000144862.15

Allele description [Variation Report for NM_182476.3(COQ6):c.622G>C (p.Asp208His)]

NM_182476.3(COQ6):c.622G>C (p.Asp208His)

Genes:
COQ6:coenzyme Q6, monooxygenase [Gene - OMIM - HGNC]
ENTPD5:ectonucleoside triphosphate diphosphohydrolase 5 (inactive) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q24.3
Genomic location:
Preferred name:
NM_182476.3(COQ6):c.622G>C (p.Asp208His)
HGVS:
  • NC_000014.9:g.73958980G>C
  • NG_032805.1:g.14047G>C
  • NM_001330189.2:c.*550C>G
  • NM_001382258.1:c.1201-3393C>G
  • NM_001382259.1:c.*550C>G
  • NM_001382260.1:c.*550C>G
  • NM_001382262.1:c.1201-3152C>G
  • NM_001425255.1:c.622G>C
  • NM_001425256.1:c.622G>C
  • NM_001425257.1:c.457G>C
  • NM_001425258.1:c.547G>C
  • NM_001425259.1:c.397G>C
  • NM_001425260.1:c.397G>C
  • NM_001425261.1:c.397G>C
  • NM_001425262.1:c.367G>C
  • NM_001425263.1:c.295G>C
  • NM_001425264.1:c.82G>C
  • NM_001425265.1:c.82G>C
  • NM_182476.3:c.622G>CMANE SELECT
  • NM_182480.3:c.547G>C
  • NP_001412184.1:p.Asp208His
  • NP_001412185.1:p.Asp208His
  • NP_001412186.1:p.Asp153His
  • NP_001412187.1:p.Asp183His
  • NP_001412188.1:p.Asp133His
  • NP_001412189.1:p.Asp133His
  • NP_001412190.1:p.Asp133His
  • NP_001412191.1:p.Asp123His
  • NP_001412192.1:p.Asp99His
  • NP_001412193.1:p.Asp28His
  • NP_001412194.1:p.Asp28His
  • NP_872282.1:p.Asp208His
  • NP_872286.2:p.Asp183His
  • NC_000014.8:g.74425683G>C
  • NM_182476.2:c.622G>C
Protein change:
D183H; ASP208HIS
Links:
OMIM: 614647.0007; dbSNP: rs606231262
NCBI 1000 Genomes Browser:
rs606231262
Molecular consequence:
  • NM_001330189.2:c.*550C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001382259.1:c.*550C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001382260.1:c.*550C>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001382258.1:c.1201-3393C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001382262.1:c.1201-3152C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001425255.1:c.622G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425256.1:c.622G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425257.1:c.457G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425258.1:c.547G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425259.1:c.397G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425260.1:c.397G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425261.1:c.397G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425262.1:c.367G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425263.1:c.295G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425264.1:c.82G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425265.1:c.82G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_182476.3:c.622G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_182480.3:c.547G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000191882OMIM
no assertion criteria provided
Uncertain significance
(Oct 1, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV001986268GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Jan 23, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A germline missense mutation in COQ6 is associated with susceptibility to familial schwannomatosis.

Zhang K, Lin JW, Wang J, Wu X, Gao H, Hsieh YC, Hwu P, Liu YR, Su L, Chiou HY, Wang D, Yuan YC, Whang-Peng J, Chiu WT, Yen Y.

Genet Med. 2014 Oct;16(10):787-92. doi: 10.1038/gim.2014.39. Epub 2014 Apr 24.

PubMed [citation]
PMID:
24763291
PMCID:
PMC4189385

Details of each submission

From OMIM, SCV000191882.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

This variant is classified as a variant of unknown significance because its contribution to schwannomatosis susceptibility (see 162091) has not been confirmed.

In a large family segregating autosomal dominant schwannomatosis (see 162091) in which affected family members were negative for mutations in SMARCB1 (601607), LZTR1 (600574), NF1 (613113), and NF2 (607379), Zhang et al. (2014) performed whole-genome sequencing on 2 sibs, 1 affected and 1 unaffected, and whole-exome sequencing on 3 sibs, 2 affected and 1 unaffected. The authors identified heterozygous variants in the MYPN (608517), COQ6, CKMT1A (613415), CYP11A1 (118485), DUOX1 (606758), and TRIOBP (609761) genes in all affected members. On the basis of intensive literature review and mutation prediction of these genetic variants, Zhang et al. (2014) focused on a c.622G-C transversion in the COQ6 gene, resulting in an asp208-to-his (D208H) substitution. The mutation altered an amino acid residue that is uniformly conserved from Escherichia coli to Homo sapiens, and a substitution there was predicted to interfere with the FAD-binding domain. Zhang et al. (2014) also performed studies on yeast and showed that loss of function of this gene caused COQ10 (607426) deficiency. The authors offered no plausible mechanism for oncogenesis due to the COQ6 mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001986268.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; This variant is associated with the following publications: (PMID: 27921248, 26808124, 24763291, 25835193, 26427841)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 7, 2024