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NM_000337.6(SGCD):c.-41A>T AND not specified

Germline classification:
not provided (1 submission)
Last evaluated:
Oct 31, 2013
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000151869.4

Allele description [Variation Report for NM_000337.6(SGCD):c.-41A>T]

NM_000337.6(SGCD):c.-41A>T

Gene:
SGCD:sarcoglycan delta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q33.3
Genomic location:
Preferred name:
NM_000337.6(SGCD):c.-41A>T
HGVS:
  • NC_000005.10:g.156329536A>T
  • NG_008693.2:g.464193A>T
  • NM_000337.6:c.-41A>TMANE SELECT
  • NM_001128209.2:c.-1+2304A>T
  • NM_172244.3:c.-41A>T
  • LRG_205:g.464193A>T
  • NC_000005.9:g.155756546A>T
  • NM_172244.2:c.-41A>T
Links:
dbSNP: rs369889635
NCBI 1000 Genomes Browser:
rs369889635
Molecular consequence:
  • NM_000337.6:c.-41A>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_172244.3:c.-41A>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001128209.2:c.-1+2304A>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000200348Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
no classification provided
not providedgermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000200348.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

-41A>T in the 5' UTR of SGCD: This variant is not expected to have clinical significance because it does not alter an amino acid residue and is not located within the splice consensus sequence. It has been identified in 1/3840 African American chromosomes

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Dec 24, 2022