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NM_001122681.2(SH3BP2):c.97C>T (p.Leu33=) AND Fibrous dysplasia of jaw

Germline classification:
Benign/Likely benign (2 submissions)
Last evaluated:
Nov 19, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000283666.12

Allele description [Variation Report for NM_001122681.2(SH3BP2):c.97C>T (p.Leu33=)]

NM_001122681.2(SH3BP2):c.97C>T (p.Leu33=)

Gene:
SH3BP2:SH3 domain binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p16.3
Genomic location:
Preferred name:
NM_001122681.2(SH3BP2):c.97C>T (p.Leu33=)
HGVS:
  • NC_000004.12:g.2820714C>T
  • NG_011609.1:g.32692C>T
  • NM_001122681.2:c.97C>TMANE SELECT
  • NM_001145855.2:c.181C>T
  • NM_001145856.2:c.268C>T
  • NM_003023.4:c.97C>T
  • NP_001116153.1:p.Leu33=
  • NP_001139327.1:p.Leu61=
  • NP_001139328.1:p.Leu90=
  • NP_003014.3:p.Leu33=
  • LRG_1334t1:c.97C>T
  • LRG_1334t2:c.181C>T
  • LRG_1334:g.32692C>T
  • LRG_1334p1:p.Leu33=
  • LRG_1334p2:p.Leu61=
  • NC_000004.11:g.2822441C>T
Links:
dbSNP: rs774809755
NCBI 1000 Genomes Browser:
rs774809755
Molecular consequence:
  • NM_001122681.2:c.97C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001145855.2:c.181C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001145856.2:c.268C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_003023.4:c.97C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Fibrous dysplasia of jaw (CRBM)
Synonyms:
Cherubism
Identifiers:
MONDO: MONDO:0007315; MedGen: C0008029; Orphanet: 184; OMIM: 118400

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000449186Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification 20161018)
Likely benign
(Jun 14, 2016)
germlineclinical testing

ICSL_Variant_Classification_20161018.pdf,

Citation Link,

SCV001716559Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Nov 19, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000449186.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001716559.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024