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NM_080680.3(COL11A2):c.5088G>A (p.Thr1696=) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 30, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000610002.4

Allele description [Variation Report for NM_080680.3(COL11A2):c.5088G>A (p.Thr1696=)]

NM_080680.3(COL11A2):c.5088G>A (p.Thr1696=)

Gene:
COL11A2:collagen type XI alpha 2 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_080680.3(COL11A2):c.5088G>A (p.Thr1696=)
HGVS:
  • NC_000006.12:g.33163801C>T
  • NG_011589.1:g.33668G>A
  • NM_080679.3:c.4767G>A
  • NM_080680.3:c.5088G>AMANE SELECT
  • NM_080681.3:c.4830G>A
  • NP_542410.2:p.Thr1589=
  • NP_542411.2:p.Thr1696=
  • NP_542411.2:p.Thr1696=
  • NP_542412.2:p.Thr1610=
  • NC_000006.11:g.33131578C>T
  • NM_080680.2:c.5088G>A
  • p.Thr1696Thr
Links:
dbSNP: rs142893093
NCBI 1000 Genomes Browser:
rs142893093
Molecular consequence:
  • NM_080679.3:c.4767G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_080680.3:c.5088G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_080681.3:c.4830G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000711369Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)		Likely benign
(Aug 30, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000711369.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

p.Thr1696Thr in exon 66 of COL11A2: This variant is not expected to have clinica l significance because it does not alter an amino acid residue and is not locate d within the splice consensus sequence. It has been identified in 6/17134 East A sian chromosomes by the Genome Aggregation Database (gnomAD, http://gnomad.broad institute.org; dbSNP rs142893093).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Sep 29, 2024