Single allele AND not provided
- Germline classification:
- Pathogenic (1 submission)
- Last evaluated:
- Apr 5, 2018
- Review status:
- 1 star out of maximum of 4 starscriteria provided, single submitter
- Somatic classification
of clinical impact: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Somatic classification
of oncogenicity: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Record status:
- current
- Accession:
- RCV000677926.2
Allele description [Variation Report for Single allele]
- Genes:
- HACD3:3-hydroxyacyl-CoA dehydratase 3 [Gene - OMIM - HGNC]
- AKAP13:A-kinase anchoring protein 13 [Gene - OMIM - HGNC]
- ADAM10:ADAM metallopeptidase domain 10 [Gene - OMIM - HGNC]
- ADAMTS17:ADAM metallopeptidase with thrombospondin type 1 motif 17 [Gene - OMIM - HGNC]
- ADAMTS7:ADAM metallopeptidase with thrombospondin type 1 motif 7 [Gene - OMIM - HGNC]
- ADAMTSL3:ADAMTS like 3 [Gene - OMIM - HGNC]
- ADPGK:ADP dependent glucokinase [Gene - OMIM - HGNC]
- AFG2B:AFG2 AAA ATPase homolog B [Gene - OMIM - HGNC]
- AGBL1:AGBL carboxypeptidase 1 [Gene - OMIM - HGNC]
- ARPIN-AP3S2:ARPIN-AP3S2 readthrough [Gene - HGNC]
- ARID3B:AT-rich interaction domain 3B [Gene - OMIM - HGNC]
- ATP8B4:ATPase phospholipid transporting 8B4 (putative) [Gene - OMIM - HGNC]
- BNIP2:BCL2 interacting protein 2 [Gene - OMIM - HGNC]
- BCL2L10:BCL2 like 10 [Gene - OMIM - HGNC]
- BCL2A1:BCL2 related protein A1 [Gene - OMIM - HGNC]
- BLM:BLM RecQ like helicase [Gene - OMIM - HGNC]
- BTBD1:BTB domain containing 1 [Gene - OMIM - HGNC]
- BUB1B:BUB1 mitotic checkpoint serine/threonine kinase B [Gene - OMIM - HGNC]
- BBS4:Bardet-Biedl syndrome 4 [Gene - OMIM - HGNC]
- BMF:Bcl2 modifying factor [Gene - OMIM - HGNC]
- CSK:C-terminal Src kinase [Gene - OMIM - HGNC]
- C2CD4A:C2 calcium dependent domain containing 4A [Gene - OMIM - HGNC]
- C2CD4B:C2 calcium dependent domain containing 4B [Gene - OMIM - HGNC]
- CD276:CD276 molecule [Gene - OMIM - HGNC]
- CDIN1:CDAN1 interacting nuclease 1 [Gene - OMIM - HGNC]
- CLK3:CDC like kinase 3 [Gene - OMIM - HGNC]
- CLN6:CLN6 transmembrane ER protein [Gene - OMIM - HGNC]
- COMMD4:COMM domain containing 4 [Gene - OMIM - HGNC]
- COPS2:COP9 signalosome subunit 2 [Gene - OMIM - HGNC]
- CRTC3:CREB regulated transcription coactivator 3 [Gene - OMIM - HGNC]
- CTDSPL2:CTD small phosphatase like 2 [Gene - OMIM - HGNC]
- CELF6:CUGBP Elav-like family member 6 [Gene - OMIM - HGNC]
- CHAC1:ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Gene - OMIM - HGNC]
- DENND4A:DENN domain containing 4A [Gene - OMIM - HGNC]
- DET1:DET1 partner of COP1 E3 ubiquitin ligase [Gene - OMIM - HGNC]
- DIS3L:DIS3 like exosome 3'-5' exoribonuclease [Gene - OMIM - HGNC]
- POLG:DNA polymerase gamma, catalytic subunit [Gene - OMIM - HGNC]
- DTWD1:DTW domain containing 1 [Gene - HGNC]
- DMXL2:Dmx like 2 [Gene - OMIM - HGNC]
- DNAJA4:DnaJ heat shock protein family (Hsp40) member A4 [Gene - HGNC]
- DNAJC17:DnaJ heat shock protein family (Hsp40) member C17 [Gene - OMIM - HGNC]
- EHD4:EH domain containing 4 [Gene - OMIM - HGNC]
- EID1:EP300 interacting inhibitor of differentiation 1 [Gene - OMIM - HGNC]
- EMC4:ER membrane protein complex subunit 4 [Gene - OMIM - HGNC]
- EMC7:ER membrane protein complex subunit 7 [Gene - OMIM - HGNC]
- FBXL22:F-box and leucine rich repeat protein 22 [Gene - OMIM - HGNC]
- FBXO22:F-box protein 22 [Gene - OMIM - HGNC]
- FANCI:FA complementation group I [Gene - OMIM - HGNC]
- FAN1:FANCD2 and FANCI associated nuclease 1 [Gene - OMIM - HGNC]
- FRMD5:FERM domain containing 5 [Gene - OMIM - HGNC]
- FES:FES proto-oncogene, tyrosine kinase [Gene - OMIM - HGNC]
- GNB5:G protein subunit beta 5 [Gene - OMIM - HGNC]
- GPR176:G protein-coupled receptor 176 [Gene - OMIM - HGNC]
- GABPB1:GA binding protein transcription factor subunit beta 1 [Gene - OMIM - HGNC]
- GDPGP1:GDP-D-glucose phosphorylase 1 [Gene - OMIM - HGNC]
- GRAMD2A:GRAM domain containing 2A [Gene - OMIM - HGNC]
- GCHFR:GTP cyclohydrolase I feedback regulator [Gene - OMIM - HGNC]
- HAUS2:HAUS augmin like complex subunit 2 [Gene - OMIM - HGNC]
- HDDC3:HD domain containing 3 [Gene - HGNC]
- HERC1:HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [Gene - OMIM - HGNC]
- IMP3:IMP U3 small nucleolar ribonucleoprotein 3 [Gene - OMIM - HGNC]
- INO80:INO80 complex ATPase subunit [Gene - OMIM - HGNC]
- IQGAP1:IQ motif containing GTPase activating protein 1 [Gene - OMIM - HGNC]
- IQCH:IQ motif containing H [Gene - OMIM - HGNC]
- ISL2:ISL LIM homeobox 2 [Gene - OMIM - HGNC]
- KLF13:KLF transcription factor 13 [Gene - OMIM - HGNC]
- LEO1:LEO1 homolog, Paf1/RNA polymerase II complex component [Gene - OMIM - HGNC]
- LARP6:La ribonucleoprotein 6, translational regulator [Gene - OMIM - HGNC]
- LYSMD2:LysM domain containing 2 [Gene - HGNC]
- LYSMD4:LysM domain containing 4 [Gene - HGNC]
- MGA:MAX dimerization protein MGA [Gene - OMIM - HGNC]
- MINDY2:MINDY lysine 48 deubiquitinase 2 [Gene - OMIM - HGNC]
- MEIS2:Meis homeobox 2 [Gene - OMIM - HGNC]
- MAPDA:N6-Methyl-AMP deaminase [Gene - OMIM - HGNC]
- NDUFAF1:NADH:ubiquinone oxidoreductase complex assembly factor 1 [Gene - OMIM - HGNC]
- NOX5:NADPH oxidase 5 [Gene - OMIM - HGNC]
- NEDD4:NEDD4 E3 ubiquitin protein ligase [Gene - OMIM - HGNC]
- NOP10:NOP10 ribonucleoprotein [Gene - OMIM - HGNC]
- NUTM1:NUT midline carcinoma family member 1 [Gene - OMIM - HGNC]
- OTUD7A:OTU deubiquitinase 7A [Gene - OMIM - HGNC]
- OIP5:Opa interacting protein 5 [Gene - OMIM - HGNC]
- PAK6-AS1:PAK6 antisense RNA 1 [Gene - HGNC]
- PATL2:PAT1 homolog 2 [Gene - OMIM - HGNC]
- PCLAF:PCNA clamp associated factor [Gene - OMIM - HGNC]
- PIF1:PIF1 5'-to-3' DNA helicase [Gene - OMIM - HGNC]
- PML:PML nuclear body scaffold [Gene - OMIM - HGNC]
- RAB11A:RAB11A, member RAS oncogene family [Gene - OMIM - HGNC]
- RAB27A:RAB27A, member RAS oncogene family [Gene - OMIM - HGNC]
- RAB8B:RAB8B, member RAS oncogene family [Gene - OMIM - HGNC]
- RAD51:RAD51 recombinase [Gene - OMIM - HGNC]
- RORA:RAR related orphan receptor A [Gene - OMIM - HGNC]
- RASGRP1:RAS guanyl releasing protein 1 [Gene - OMIM - HGNC]
- RASL12:RAS like family 12 [Gene - HGNC]
- RCCD1:RCC1 domain containing 1 [Gene - OMIM - HGNC]
- REC114:REC114 meiotic recombination protein [Gene - OMIM - HGNC]
- RBPMS2:RNA binding protein, mRNA processing factor 2 [Gene - OMIM - HGNC]
- RAMAC:RNA guanine-7 methyltransferase activating subunit [Gene - OMIM - HGNC]
- RPAP1:RNA polymerase II associated protein 1 [Gene - OMIM - HGNC]
- POLR2M:RNA polymerase II subunit M [Gene - OMIM - HGNC]
- RPUSD2:RNA pseudouridine synthase domain containing 2 [Gene - HGNC]
- RNU5A-1:RNA, U5A small nuclear 1 [Gene - OMIM - HGNC]
- RNU6-1:RNA, U6 small nuclear 1 [Gene - OMIM - HGNC]
- RTF1:RTF1 homolog, Paf1/RNA polymerase II complex component [Gene - OMIM - HGNC]
- RASGRF1:Ras protein specific guanine nucleotide releasing factor 1 [Gene - OMIM - HGNC]
- RHCG:Rh family C glycoprotein [Gene - OMIM - HGNC]
- ARHGAP11A:Rho GTPase activating protein 11A [Gene - OMIM - HGNC]
- SCAPER:S-phase cyclin A associated protein in the ER [Gene - OMIM - HGNC]
- SLTM:SAFB like transcription modulator [Gene - HGNC]
- SEC11A:SEC11 homolog A, signal peptidase complex subunit [Gene - OMIM - HGNC]
- SECISBP2L:SECIS binding protein 2 like [Gene - OMIM - HGNC]
- SH2D7:SH2 domain containing 7 [Gene - HGNC]
- SH3GL3:SH3 domain containing GRB2 like 3, endophilin A3 [Gene - OMIM - HGNC]
- SHC4:SHC adaptor protein 4 [Gene - OMIM - HGNC]
- SIN3A:SIN3 transcription regulator family member A [Gene - OMIM - HGNC]
- SKOR1:SKI family transcriptional corepressor 1 [Gene - OMIM - HGNC]
- SKIC8:SKI8 subunit of superkiller complex [Gene - OMIM - HGNC]
- SLC51B:SLC51 subunit beta [Gene - OMIM - HGNC]
- SMAD3:SMAD family member 3 [Gene - OMIM - HGNC]
- SMAD6:SMAD family member 6 [Gene - OMIM - HGNC]
- SPG11:SPG11 vesicle trafficking associated, spatacsin [Gene - OMIM - HGNC]
- SPG21:SPG21 abhydrolase domain containing, maspardin [Gene - OMIM - HGNC]
- ST20-MTHFS:ST20-MTHFS readthrough [Gene - HGNC]
- ST8SIA2:ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Gene - OMIM - HGNC]
- SENP8:SUMO peptidase family member, NEDD8 specific [Gene - OMIM - HGNC]
- SHF:Src homology 2 domain containing F [Gene - OMIM - HGNC]
- STARD5:StAR related lipid transfer domain containing 5 [Gene - OMIM - HGNC]
- STARD9:StAR related lipid transfer domain containing 9 [Gene - OMIM - HGNC]
- TBC1D21:TBC1 domain family member 21 [Gene - OMIM - HGNC]
- TBC1D2B:TBC1 domain family member 2B [Gene - OMIM - HGNC]
- THAP10:THAP domain containing 10 [Gene - OMIM - HGNC]
- TIPIN:TIMELESS interacting protein [Gene - OMIM - HGNC]
- TLE3:TLE family member 3, transcriptional corepressor [Gene - OMIM - HGNC]
- TM2D3:TM2 domain containing 3 [Gene - OMIM - HGNC]
- TNFAIP8L3:TNF alpha induced protein 8 like 3 [Gene - OMIM - HGNC]
- TICRR:TOPBP1 interacting checkpoint and replication regulator [Gene - OMIM - HGNC]
- TYRO3:TYRO3 protein tyrosine kinase [Gene - OMIM - HGNC]
- VPS18:VPS18 core subunit of CORVET and HOPS complexes [Gene - OMIM - HGNC]
- VPS33B:VPS33B late endosome and lysosome associated [Gene - OMIM - HGNC]
- VPS39:VPS39 subunit of HOPS complex [Gene - OMIM - HGNC]
- WHAMM:WASP homolog associated with actin, golgi membranes and microtubules [Gene - OMIM - HGNC]
- WDR72:WD repeat domain 72 [Gene - OMIM - HGNC]
- WDR73:WD repeat domain 73 [Gene - OMIM - HGNC]
- WDR76:WD repeat domain 76 [Gene - OMIM - HGNC]
- WDR93:WD repeat domain 93 [Gene - OMIM - HGNC]
- ABHD17C:abhydrolase domain containing 17C, depalmitoylase [Gene - OMIM - HGNC]
- ABHD2:abhydrolase domain containing 2, acylglycerol lipase [Gene - OMIM - HGNC]
- ANP32A:acidic nuclear phosphoprotein 32 family member A [Gene - OMIM - HGNC]
- ACTC1:actin alpha cardiac muscle 1 [Gene - OMIM - HGNC]
- ARPIN:actin related protein 2/3 complex inhibitor [Gene - OMIM - HGNC]
- ACSBG1:acyl-CoA synthetase bubblegum family member 1 [Gene - OMIM - HGNC]
- AP3B2:adaptor related protein complex 3 subunit beta 2 [Gene - OMIM - HGNC]
- AP3S2:adaptor related protein complex 3 subunit sigma 2 [Gene - OMIM - HGNC]
- AP4E1:adaptor related protein complex 4 subunit epsilon 1 [Gene - OMIM - HGNC]
- ACAN:aggrecan [Gene - OMIM - HGNC]
- ANPEP:alanyl aminopeptidase, membrane [Gene - OMIM - HGNC]
- ALDH1A2:aldehyde dehydrogenase 1 family member A2 [Gene - OMIM - HGNC]
- ALDH1A3:aldehyde dehydrogenase 1 family member A3 [Gene - OMIM - HGNC]
- AAGAB:alpha and gamma adaptin binding protein [Gene - OMIM - HGNC]
- ALPK3:alpha kinase 3 [Gene - OMIM - HGNC]
- ASB7:ankyrin repeat and SOCS box containing 7 [Gene - OMIM - HGNC]
- ANKDD1A:ankyrin repeat and death domain containing 1A [Gene - HGNC]
- ANKRD34C:ankyrin repeat domain 34C [Gene - HGNC]
- ANKRD63:ankyrin repeat domain 63 [Gene - HGNC]
- ANXA2:annexin A2 [Gene - OMIM - HGNC]
- APH1B:aph-1 homolog B, gamma-secretase subunit [Gene - OMIM - HGNC]
- AVEN:apoptosis and caspase activation inhibitor [Gene - OMIM - HGNC]
- AEN:apoptosis enhancing nuclease [Gene - OMIM - HGNC]
- AQP9:aquaporin 9 [Gene - OMIM - HGNC]
- AQR:aquarius intron-binding spliceosomal factor [Gene - OMIM - HGNC]
- ARIH1:ariadne RBR E3 ubiquitin protein ligase 1 [Gene - OMIM - HGNC]
- ARRDC4:arrestin domain containing 4 [Gene - OMIM - HGNC]
- ARNT2:aryl hydrocarbon receptor nuclear translocator 2 [Gene - OMIM - HGNC]
- ATOSA:atos homolog A [Gene - OMIM - HGNC]
- BNC1:basonuclin zinc finger protein 1 [Gene - OMIM - HGNC]
- B2M:beta-2-microglobulin [Gene - OMIM - HGNC]
- BLOC1S6:biogenesis of lysosomal organelles complex 1 subunit 6 [Gene - OMIM - HGNC]
- BAHD1:bromo adjacent homology domain containing 1 [Gene - OMIM - HGNC]
- ARPP19:cAMP regulated phosphoprotein 19 [Gene - OMIM - HGNC]
- CHP1:calcineurin like EF-hand protein 1 [Gene - OMIM - HGNC]
- CIB1:calcium and integrin binding 1 [Gene - OMIM - HGNC]
- CIB2:calcium and integrin binding family member 2 [Gene - OMIM - HGNC]
- CALML4:calmodulin like 4 [Gene - OMIM - HGNC]
- CAPN3:calpain 3 [Gene - OMIM - HGNC]
- CT62:cancer/testis associated 62 [Gene - HGNC]
- CHST14:carbohydrate sulfotransferase 14 [Gene - OMIM - HGNC]
- CA12:carbonic anhydrase 12 [Gene - OMIM - HGNC]
- CILP:cartilage intermediate layer protein [Gene - OMIM - HGNC]
- CSNK1G1:casein kinase 1 gamma 1 [Gene - OMIM - HGNC]
- CLPX:caseinolytic mitochondrial matrix peptidase chaperone subunit X [Gene - OMIM - HGNC]
- CTSH:cathepsin H [Gene - OMIM - HGNC]
- CATSPER2:cation channel sperm associated 2 [Gene - OMIM - HGNC]
- CCPG1:cell cycle progression 1 [Gene - OMIM - HGNC]
- CEMIP:cell migration inducing hyaluronidase 1 [Gene - OMIM - HGNC]
- CRABP1:cellular retinoic acid binding protein 1 [Gene - OMIM - HGNC]
- CEP152:centrosomal protein 152 [Gene - OMIM - HGNC]
- CERS3:ceramide synthase 3 [Gene - OMIM - HGNC]
- CHRM5:cholinergic receptor muscarinic 5 [Gene - OMIM - HGNC]
- CHRNA3:cholinergic receptor nicotinic alpha 3 subunit [Gene - OMIM - HGNC]
- CHRNA5:cholinergic receptor nicotinic alpha 5 subunit [Gene - OMIM - HGNC]
- CHRNA7:cholinergic receptor nicotinic alpha 7 subunit [Gene - OMIM - HGNC]
- CHRNB4:cholinergic receptor nicotinic beta 4 subunit [Gene - OMIM - HGNC]
- CSPG4:chondroitin sulfate proteoglycan 4 [Gene - OMIM - HGNC]
- CHSY1:chondroitin sulfate synthase 1 [Gene - OMIM - HGNC]
- CHD2:chromodomain helicase DNA binding protein 2 [Gene - OMIM - HGNC]
- C15orf39:chromosome 15 open reading frame 39 [Gene - HGNC]
- C15orf40:chromosome 15 open reading frame 40 [Gene - HGNC]
- C15orf48:chromosome 15 open reading frame 48 [Gene - OMIM - HGNC]
- C15orf61:chromosome 15 open reading frame 61 [Gene - HGNC]
- C15orf62:chromosome 15 open reading frame 62 [Gene - HGNC]
- C15orf32:chromosome 15 putative open reading frame 32 [Gene - HGNC]
- CFAP161:cilia and flagella associated protein 161 [Gene - HGNC]
- CIMAP1C:ciliary microtubule associated protein 1C [Gene - HGNC]
- CGNL1:cingulin like 1 [Gene - OMIM - HGNC]
- CDAN1:codanin 1 [Gene - OMIM - HGNC]
- CCDC32:coiled-coil domain containing 32 [Gene - OMIM - HGNC]
- CCDC33:coiled-coil domain containing 33 [Gene - OMIM - HGNC]
- CCDC9B:coiled-coil domain containing 9B [Gene - HGNC]
- CPLX3:complexin 3 [Gene - OMIM - HGNC]
- CORO2B:coronin 2B [Gene - OMIM - HGNC]
- CTXN2:cortexin 2 [Gene - HGNC]
- CKMT1A:creatine kinase, mitochondrial 1A [Gene - OMIM - HGNC]
- CKMT1B:creatine kinase, mitochondrial 1B [Gene - OMIM - HGNC]
- CCNB2:cyclin B2 [Gene - OMIM - HGNC]
- CCNDBP1:cyclin D1 binding protein 1 [Gene - OMIM - HGNC]
- CYP1A1:cytochrome P450 family 1 subfamily A member 1 [Gene - OMIM - HGNC]
- CYP1A2:cytochrome P450 family 1 subfamily A member 2 [Gene - OMIM - HGNC]
- CYP11A1:cytochrome P450 family 11 subfamily A member 1 [Gene - OMIM - HGNC]
- CYP19A1:cytochrome P450 family 19 subfamily A member 1 [Gene - OMIM - HGNC]
- COX5A:cytochrome c oxidase subunit 5A [Gene - OMIM - HGNC]
- CPEB1:cytoplasmic polyadenylation element binding protein 1 [Gene - OMIM - HGNC]
- CIAO2A:cytosolic iron-sulfur assembly component 2A [Gene - OMIM - HGNC]
- DAPK2:death associated protein kinase 2 [Gene - OMIM - HGNC]
- DLL4:delta like canonical Notch ligand 4 [Gene - OMIM - HGNC]
- DUT:deoxyuridine triphosphatase [Gene - OMIM - HGNC]
- DPP8:dipeptidyl peptidase 8 [Gene - OMIM - HGNC]
- PPIP5K1:diphosphoinositol pentakisphosphate kinase 1 [Gene - OMIM - HGNC]
- DPH6:diphthamine biosynthesis 6 [Gene - OMIM - HGNC]
- DISP2:dispatched RND transporter family member 2 [Gene - OMIM - HGNC]
- DUOX1:dual oxidase 1 [Gene - OMIM - HGNC]
- DUOX2:dual oxidase 2 [Gene - OMIM - HGNC]
- DUOXA1:dual oxidase maturation factor 1 [Gene - OMIM - HGNC]
- DUOXA2:dual oxidase maturation factor 2 [Gene - OMIM - HGNC]
- DNAAF4:dynein axonemal assembly factor 4 [Gene - OMIM - HGNC]
- ETFA:electron transfer flavoprotein subunit alpha [Gene - OMIM - HGNC]
- ELL3:elongation factor for RNA polymerase II 3 [Gene - OMIM - HGNC]
- EFL1:elongation factor like GTPase 1 [Gene - OMIM - HGNC]
- EDC3:enhancer of mRNA decapping 3 [Gene - OMIM - HGNC]
- EPB42:erythrocyte membrane protein band 4.2 [Gene - OMIM - HGNC]
- EIF2AK4:eukaryotic translation initiation factor 2 alpha kinase 4 [Gene - OMIM - HGNC]
- EIF3J:eukaryotic translation initiation factor 3 subunit J [Gene - OMIM - HGNC]
- EXD1:exonuclease 3'-5' domain containing 1 [Gene - HGNC]
- FAM174B:family with sequence similarity 174 member B [Gene - HGNC]
- FAM219B:family with sequence similarity 219 member B [Gene - HGNC]
- FAM227B:family with sequence similarity 227 member B [Gene - HGNC]
- FAM81A:family with sequence similarity 81 member A [Gene - HGNC]
- FAM98B:family with sequence similarity 98 member B [Gene - OMIM - HGNC]
- FEM1B:fem-1 homolog B [Gene - OMIM - HGNC]
- FBN1:fibrillin 1 [Gene - OMIM - HGNC]
- FGF7:fibroblast growth factor 7 [Gene - OMIM - HGNC]
- FSD2:fibronectin type III and SPRY domain containing 2 [Gene - HGNC]
- FSIP1:fibrous sheath interacting protein 1 [Gene - OMIM - HGNC]
- FOXB1:forkhead box B1 [Gene - OMIM - HGNC]
- FAH:fumarylacetoacetate hydrolase [Gene - OMIM - HGNC]
- FURIN:furin, paired basic amino acid cleaving enzyme [Gene - OMIM - HGNC]
- GALK2:galactokinase 2 [Gene - OMIM - HGNC]
- GJD2:gap junction protein delta 2 [Gene - OMIM - HGNC]
- GTF2A2:general transcription factor IIA subunit 2 [Gene - OMIM - HGNC]
- GLDN:gliomedin [Gene - OMIM - HGNC]
- GCNT3:glucosaminyl (N-acetyl) transferase 3, mucin type [Gene - OMIM - HGNC]
- GANC:glucosidase alpha, neutral C [Gene - OMIM - HGNC]
- GLCE:glucuronic acid epimerase [Gene - OMIM - HGNC]
- GATM:glycine amidinotransferase [Gene - OMIM - HGNC]
- GOLM2:golgi membrane protein 2 [Gene - HGNC]
- GOLGA6A:golgin A6 family member A [Gene - OMIM - HGNC]
- GOLGA6B:golgin A6 family member B [Gene - HGNC]
- GOLGA6C:golgin A6 family member C [Gene - HGNC]
- GOLGA6D:golgin A6 family member D [Gene - HGNC]
- GOLGA8A:golgin A8 family member A [Gene - OMIM - HGNC]
- GOLGA8B:golgin A8 family member B [Gene - OMIM - HGNC]
- GOLGA8N:golgin A8 family member N [Gene - HGNC]
- GOLGA8O:golgin A8 family member O [Gene - HGNC]
- GREM1:gremlin 1, DAN family BMP antagonist [Gene - OMIM - HGNC]
- HEXA:hexosaminidase subunit alpha [Gene - OMIM - HGNC]
- HMG20A:high mobility group 20A [Gene - OMIM - HGNC]
- HDC:histidine decarboxylase [Gene - OMIM - HGNC]
- HOMER2:homer scaffold protein 2 [Gene - OMIM - HGNC]
- HYPK:huntingtin interacting protein K [Gene - OMIM - HGNC]
- HAPLN3:hyaluronan and proteoglycan link protein 3 [Gene - HGNC]
- HYKK:hydroxylysine kinase [Gene - OMIM - HGNC]
- HCN4:hyperpolarization activated cyclic nucleotide gated potassium channel 4 [Gene - OMIM - HGNC]
- IGDCC3:immunoglobulin superfamily DCC subclass member 3 [Gene - OMIM - HGNC]
- IGDCC4:immunoglobulin superfamily DCC subclass member 4 [Gene - OMIM - HGNC]
- ISLR2:immunoglobulin superfamily containing leucine rich repeat 2 [Gene - OMIM - HGNC]
- ISLR:immunoglobulin superfamily containing leucine rich repeat [Gene - OMIM - HGNC]
- INSYN1:inhibitory synaptic factor 1 [Gene - OMIM - HGNC]
- ITPKA:inositol-trisphosphate 3-kinase A [Gene - OMIM - HGNC]
- IGF1R:insulin like growth factor 1 receptor [Gene - OMIM - HGNC]
- INTS14:integrator complex subunit 14 [Gene - OMIM - HGNC]
- ITGA11:integrin subunit alpha 11 [Gene - OMIM - HGNC]
- ICE2:interactor of little elongation complex ELL subunit 2 [Gene - OMIM - HGNC]
- ISG20:interferon stimulated exonuclease gene 20 [Gene - OMIM - HGNC]
- IL16:interleukin 16 [Gene - OMIM - HGNC]
- IREB2:iron responsive element binding protein 2 [Gene - OMIM - HGNC]
- IDH3A:isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha [Gene - OMIM - HGNC]
- IDH2:isocitrate dehydrogenase (NADP(+)) 2 [Gene - OMIM - HGNC]
- IVD:isovaleryl-CoA dehydrogenase [Gene - OMIM - HGNC]
- JMJD7:jumonji domain containing 7 [Gene - HGNC]
- KATNBL1:katanin regulatory subunit B1 like 1 [Gene - OMIM - HGNC]
- KLHL25:kelch like family member 25 [Gene - OMIM - HGNC]
- KBTBD13:kelch repeat and BTB domain containing 13 [Gene - OMIM - HGNC]
- KIF23:kinesin family member 23 [Gene - OMIM - HGNC]
- KIF7:kinesin family member 7 [Gene - OMIM - HGNC]
- KNSTRN:kinetochore localized astrin (SPAG5) binding protein [Gene - OMIM - HGNC]
- KNL1:kinetochore scaffold 1 [Gene - OMIM - HGNC]
- LACTB:lactamase beta [Gene - OMIM - HGNC]
- LCTL:lactase like [Gene - OMIM - HGNC]
- LDHAL6B:lactate dehydrogenase A like 6B [Gene - HGNC]
- LMAN1L:lectin, mannose binding 1 like [Gene - OMIM - HGNC]
- LCMT2:leucine carboxyl methyltransferase 2 [Gene - OMIM - HGNC]
- LINGO1:leucine rich repeat and Ig domain containing 1 [Gene - OMIM - HGNC]
- LRRC28:leucine rich repeat containing 28 [Gene - HGNC]
- LRRC49:leucine rich repeat containing 49 [Gene - OMIM - HGNC]
- LRRC57:leucine rich repeat containing 57 [Gene - HGNC]
- LRRK1:leucine rich repeat kinase 1 [Gene - OMIM - HGNC]
- LTK:leukocyte receptor tyrosine kinase [Gene - OMIM - HGNC]
- LINS1:lines homolog 1 [Gene - OMIM - HGNC]
- LIPC:lipase C, hepatic type [Gene - OMIM - HGNC]
- LINC02694:long intergenic non-protein coding RNA 2694 [Gene - HGNC]
- LINC02915:long intergenic non-protein coding RNA 2915 [Gene - HGNC]
- LINC00928:long intergenic non-protein coding RNA 928 [Gene - HGNC]
- LPCAT4:lysophosphatidylcholine acyltransferase 4 [Gene - OMIM - HGNC]
- LOXL1:lysyl oxidase like 1 [Gene - OMIM - HGNC]
- MPI:mannose phosphate isomerase [Gene - OMIM - HGNC]
- MAN2A2:mannosidase alpha class 2A member 2 [Gene - OMIM - HGNC]
- MAN2C1:mannosidase alpha class 2C member 1 [Gene - OMIM - HGNC]
- MNS1:meiosis specific nuclear structural 1 [Gene - OMIM - HGNC]
- MINAR1:membrane integral NOTCH2 associated receptor 1 [Gene - OMIM - HGNC]
- MESD:mesoderm development LRP chaperone [Gene - OMIM - HGNC]
- MESP1:mesoderm posterior bHLH transcription factor 1 [Gene - OMIM - HGNC]
- MESP2:mesoderm posterior bHLH transcription factor 2 [Gene - OMIM - HGNC]
- MTHFS:methenyltetrahydrofolate synthetase [Gene - OMIM - HGNC]
- MEX3B:mex-3 RNA binding family member B [Gene - OMIM - HGNC]
- MIR184:microRNA 184 [Gene - OMIM - HGNC]
- MIR211:microRNA 211 [Gene - OMIM - HGNC]
- MIR9-3:microRNA 9-3 [Gene - OMIM - HGNC]
- MFAP1:microfibril associated protein 1 [Gene - OMIM - HGNC]
- MAP1A:microtubule associated protein 1A [Gene - OMIM - HGNC]
- MFGE8:milk fat globule EGF and factor V/VIII domain containing [Gene - OMIM - HGNC]
- MTFMT:mitochondrial methionyl-tRNA formyltransferase [Gene - OMIM - HGNC]
- MRPL46:mitochondrial ribosomal protein L46 [Gene - OMIM - HGNC]
- MRPS11:mitochondrial ribosomal protein S11 [Gene - OMIM - HGNC]
- MAPK6:mitogen-activated protein kinase 6 [Gene - OMIM - HGNC]
- MAPKBP1:mitogen-activated protein kinase binding protein 1 [Gene - OMIM - HGNC]
- MAP2K1:mitogen-activated protein kinase kinase 1 [Gene - OMIM - HGNC]
- MAP2K5:mitogen-activated protein kinase kinase 5 [Gene - OMIM - HGNC]
- MORF4L1:mortality factor 4 like 1 [Gene - OMIM - HGNC]
- MCTP2:multiple C2 and transmembrane domain containing 2 [Gene - OMIM - HGNC]
- MEGF11:multiple EGF like domains 11 [Gene - OMIM - HGNC]
- MYEF2:myelin expression factor 2 [Gene - OMIM - HGNC]
- MYZAP:myocardial zonula adherens protein [Gene - OMIM - HGNC]
- MEF2A:myocyte enhancer factor 2A [Gene - OMIM - HGNC]
- MYO1E:myosin IE [Gene - OMIM - HGNC]
- MYO9A:myosin IXA [Gene - OMIM - HGNC]
- MYO5A:myosin VA [Gene - OMIM - HGNC]
- MYO5C:myosin VC [Gene - OMIM - HGNC]
- MTMR10:myotubularin related protein 10 [Gene - HGNC]
- NEIL1:nei like DNA glycosylase 1 [Gene - OMIM - HGNC]
- NEO1:neogenin 1 [Gene - OMIM - HGNC]
- NGRN:neugrin, neurite outgrowth associated [Gene - OMIM - HGNC]
- NRG4:neuregulin 4 [Gene - OMIM - HGNC]
- NMB:neuromedin B [Gene - OMIM - HGNC]
- NPTN:neuroplastin [Gene - OMIM - HGNC]
- NTRK3:neurotrophic receptor tyrosine kinase 3 [Gene - OMIM - HGNC]
- NR2E3:nuclear receptor subfamily 2 group E member 3 [Gene - OMIM - HGNC]
- NR2F2:nuclear receptor subfamily 2 group F member 2 [Gene - OMIM - HGNC]
- NUSAP1:nucleolar and spindle associated protein 1 [Gene - OMIM - HGNC]
- OR4F6:olfactory receptor family 4 subfamily F member 6 [Gene - HGNC]
- ONECUT1:one cut homeobox 1 [Gene - OMIM - HGNC]
- OAZ2:ornithine decarboxylase antizyme 2 [Gene - OMIM - HGNC]
- PAK6:p21 (RAC1) activated kinase 6 [Gene - OMIM - HGNC]
- PPIB:peptidylprolyl isomerase B [Gene - OMIM - HGNC]
- PLIN1:perilipin 1 [Gene - OMIM - HGNC]
- PEX11A:peroxisomal biogenesis factor 11 alpha [Gene - OMIM - HGNC]
- PIGB:phosphatidylinositol glycan anchor biosynthesis class B [Gene - OMIM - HGNC]
- PDE8A:phosphodiesterase 8A [Gene - OMIM - HGNC]
- PLA2G4B:phospholipase A2 group IVB [Gene - OMIM - HGNC]
- PLA2G4D:phospholipase A2 group IVD [Gene - OMIM - HGNC]
- PLA2G4E:phospholipase A2 group IVE [Gene - OMIM - HGNC]
- PLA2G4F:phospholipase A2 group IVF [Gene - HGNC]
- PLCB2:phospholipase C beta 2 [Gene - OMIM - HGNC]
- PPCDC:phosphopantothenoylcysteine decarboxylase [Gene - OMIM - HGNC]
- PIERCE2:piercer of microtubule wall 2 [Gene - OMIM - HGNC]
- PGBD4:piggyBac transposable element derived 4 [Gene - HGNC]
- PLEKHO2:pleckstrin homology domain containing O2 [Gene - HGNC]
- PARP16:poly(ADP-ribose) polymerase family member 16 [Gene - OMIM - HGNC]
- PARP6:poly(ADP-ribose) polymerase family member 6 [Gene - OMIM - HGNC]
- PAQR5:progestin and adipoQ receptor family member 5 [Gene - OMIM - HGNC]
- PDCD7:programmed cell death 7 [Gene - OMIM - HGNC]
- PHGR1:proline, histidine and glycine rich 1 [Gene - HGNC]
- PSTPIP1:proline-serine-threonine phosphatase interacting protein 1 [Gene - OMIM - HGNC]
- PCSK6:proprotein convertase subtilisin/kexin type 6 [Gene - OMIM - HGNC]
- PSMA4:proteasome 20S subunit alpha 4 [Gene - OMIM - HGNC]
- PDIA3:protein disulfide isomerase family A member 3 [Gene - OMIM - HGNC]
- PIAS1:protein inhibitor of activated STAT 1 [Gene - OMIM - HGNC]
- PPP1R14D:protein phosphatase 1 regulatory inhibitor subunit 14D [Gene - OMIM - HGNC]
- PRC1:protein regulator of cytokinesis 1 [Gene - OMIM - HGNC]
- PTPN9:protein tyrosine phosphatase non-receptor type 9 [Gene - OMIM - HGNC]
- PRTG:protogenin [Gene - OMIM - HGNC]
- PEAK1:pseudopodium enriched atypical kinase 1 [Gene - OMIM - HGNC]
- PYGO1:pygopus family PHD finger 1 [Gene - OMIM - HGNC]
- PGPEP1L:pyroglutamyl-peptidase I like [Gene - HGNC]
- PKM:pyruvate kinase M1/2 [Gene - OMIM - HGNC]
- RHOV:ras homolog family member V [Gene - OMIM - HGNC]
- RMDN3:regulator of microtubule dynamics 3 [Gene - OMIM - HGNC]
- RFX7:regulatory factor X7 [Gene - OMIM - HGNC]
- RGMA:repulsive guidance molecule BMP co-receptor a [Gene - OMIM - HGNC]
- RCN2:reticulocalbin 2 [Gene - OMIM - HGNC]
- RLBP1:retinaldehyde binding protein 1 [Gene - OMIM - HGNC]
- RPP25:ribonuclease P and MRP subunit p25 [Gene - OMIM - HGNC]
- RSL24D1:ribosomal L24 domain containing 1 [Gene - OMIM - HGNC]
- RPL4:ribosomal protein L4 [Gene - OMIM - HGNC]
- RPS17:ribosomal protein S17 [Gene - OMIM - HGNC]
- RPS27L:ribosomal protein S27 like [Gene - OMIM - HGNC]
- RPLP1:ribosomal protein lateral stalk subunit P1 [Gene - OMIM - HGNC]
- RNF111:ring finger protein 111 [Gene - OMIM - HGNC]
- RYR3:ryanodine receptor 3 [Gene - OMIM - HGNC]
- SCG3:secretogranin III [Gene - OMIM - HGNC]
- SCG5:secretogranin V [Gene - OMIM - HGNC]
- SCAMP2:secretory carrier membrane protein 2 [Gene - OMIM - HGNC]
- SCAMP5:secretory carrier membrane protein 5 [Gene - OMIM - HGNC]
- SELENOS:selenoprotein S [Gene - OMIM - HGNC]
- SEMA4B:semaphorin 4B [Gene - OMIM - HGNC]
- SEMA6D:semaphorin 6D [Gene - OMIM - HGNC]
- SEMA7A:semaphorin 7A (JohnMiltonHagen blood group) [Gene - OMIM - HGNC]
- SERINC4:serine incorporator 4 [Gene - OMIM - HGNC]
- SPINT1:serine peptidase inhibitor, Kunitz type 1 [Gene - OMIM - HGNC]
- SPPL2A:signal peptide peptidase like 2A [Gene - OMIM - HGNC]
- SRP14:signal recognition particle 14 [Gene - OMIM - HGNC]
- STRA6:signaling receptor and transporter of retinol STRA6 [Gene - OMIM - HGNC]
- SCARNA15:small Cajal body-specific RNA 15 [Gene - OMIM - HGNC]
- SERF2:small EDRK-rich factor 2 [Gene - OMIM - HGNC]
- SNAPC5:small nuclear RNA activating complex polypeptide 5 [Gene - OMIM - HGNC]
- SNRPA1:small nuclear ribonucleoprotein polypeptide A' [Gene - OMIM - HGNC]
- SNUPN:snurportin 1 [Gene - OMIM - HGNC]
- SLC12A1:solute carrier family 12 member 1 [Gene - OMIM - HGNC]
- SLC12A6:solute carrier family 12 member 6 [Gene - OMIM - HGNC]
- SLC24A1:solute carrier family 24 member 1 [Gene - OMIM - HGNC]
- SLC24A5:solute carrier family 24 member 5 [Gene - OMIM - HGNC]
- SLC27A2:solute carrier family 27 member 2 [Gene - OMIM - HGNC]
- SLC28A1:solute carrier family 28 member 1 [Gene - OMIM - HGNC]
- SLC28A2:solute carrier family 28 member 2 [Gene - OMIM - HGNC]
- SLC30A4:solute carrier family 30 member 4 [Gene - OMIM - HGNC]
- SLCO3A1:solute carrier organic anion transporter family member 3A1 [Gene - OMIM - HGNC]
- SORD:sorbitol dehydrogenase [Gene - OMIM - HGNC]
- SNX1:sorting nexin 1 [Gene - OMIM - HGNC]
- SNX22:sorting nexin 22 [Gene - HGNC]
- SNX33:sorting nexin 33 [Gene - OMIM - HGNC]
- SPTBN5:spectrin beta, non-erythrocytic 5 [Gene - OMIM - HGNC]
- SPESP1:sperm equatorial segment protein 1 [Gene - OMIM - HGNC]
- SPATA8:spermatogenesis associated 8 [Gene - OMIM - HGNC]
- SPRED1:sprouty related EVH1 domain containing 1 [Gene - OMIM - HGNC]
- SAXO2:stabilizer of axonemal microtubules 2 [Gene - HGNC]
- STRC:stereocilin [Gene - OMIM - HGNC]
- STOML1:stomatin like 1 [Gene - OMIM - HGNC]
- SQOR:sulfide quinone oxidoreductase [Gene - OMIM - HGNC]
- ST20:suppressor of tumorigenicity 20 [Gene - HGNC]
- SV2B:synaptic vesicle glycoprotein 2B [Gene - OMIM - HGNC]
- SNAP23:synaptosome associated protein 23 [Gene - OMIM - HGNC]
- SYNM:synemin [Gene - OMIM - HGNC]
- TLN2:talin 2 [Gene - OMIM - HGNC]
- TLNRD1:talin rod domain containing 1 [Gene - OMIM - HGNC]
- TTBK2:tau tubulin kinase 2 [Gene - OMIM - HGNC]
- TERB2:telomere repeat binding bouquet formation protein 2 [Gene - OMIM - HGNC]
- TEX9:testis expressed 9 [Gene - HGNC]
- TSPAN3:tetraspanin 3 [Gene - OMIM - HGNC]
- TTC23:tetratricopeptide repeat domain 23 [Gene - HGNC]
- TARS3:threonyl-tRNA synthetase 3 [Gene - HGNC]
- THBS1:thrombospondin 1 [Gene - OMIM - HGNC]
- THSD4:thrombospondin type 1 domain containing 4 [Gene - OMIM - HGNC]
- TRIP4:thyroid hormone receptor interactor 4 [Gene - OMIM - HGNC]
- TCF12:transcription factor 12 [Gene - OMIM - HGNC]
- TGM5:transglutaminase 5 [Gene - OMIM - HGNC]
- TGM7:transglutaminase 7 [Gene - OMIM - HGNC]
- TRPM1:transient receptor potential cation channel subfamily M member 1 [Gene - OMIM - HGNC]
- TRPM7:transient receptor potential cation channel subfamily M member 7 [Gene - OMIM - HGNC]
- TM6SF1:transmembrane 6 superfamily member 1 [Gene - OMIM - HGNC]
- TMCO5A:transmembrane and coiled-coil domains 5A [Gene - HGNC]
- TMC3:transmembrane channel like 3 [Gene - OMIM - HGNC]
- TMED3:transmembrane p24 trafficking protein 3 [Gene - OMIM - HGNC]
- TMEM202:transmembrane protein 202 [Gene - HGNC]
- TMEM266:transmembrane protein 266 [Gene - OMIM - HGNC]
- TMEM62:transmembrane protein 62 [Gene - HGNC]
- TMEM87A:transmembrane protein 87A [Gene - HGNC]
- TRIM69:tripartite motif containing 69 [Gene - OMIM - HGNC]
- TMOD2:tropomodulin 2 [Gene - OMIM - HGNC]
- TMOD3:tropomodulin 3 [Gene - OMIM - HGNC]
- TPM1:tropomyosin 1 [Gene - OMIM - HGNC]
- TUBGCP4:tubulin gamma complex component 4 [Gene - OMIM - HGNC]
- TP53BP1:tumor protein p53 binding protein 1 [Gene - OMIM - HGNC]
- UBAP1L:ubiquitin associated protein 1 like [Gene - HGNC]
- UBE2Q2:ubiquitin conjugating enzyme E2 Q2 [Gene - OMIM - HGNC]
- UBL7:ubiquitin like 7 [Gene - OMIM - HGNC]
- UBR1:ubiquitin protein ligase E3 component n-recognin 1 [Gene - OMIM - HGNC]
- USP3:ubiquitin specific peptidase 3 [Gene - OMIM - HGNC]
- USP50:ubiquitin specific peptidase 50 [Gene - OMIM - HGNC]
- USP8:ubiquitin specific peptidase 8 [Gene - OMIM - HGNC]
- UNC13C:unc-13 homolog C [Gene - OMIM - HGNC]
- UNC45A:unc-45 myosin chaperone A [Gene - OMIM - HGNC]
- ULK3:unc-51 like kinase 3 [Gene - OMIM - HGNC]
- UACA:uveal autoantigen with coiled-coil domains and ankyrin repeats [Gene - OMIM - HGNC]
- VPS13C:vacuolar protein sorting 13 homolog C [Gene - OMIM - HGNC]
- ZFAND6:zinc finger AN1-type containing 6 [Gene - OMIM - HGNC]
- ZFYVE19:zinc finger FYVE-type containing 19 [Gene - OMIM - HGNC]
- ZSCAN29:zinc finger and SCAN domain containing 29 [Gene - HGNC]
- ZSCAN2:zinc finger and SCAN domain containing 2 [Gene - HGNC]
- ZNF106:zinc finger protein 106 [Gene - OMIM - HGNC]
- ZNF280D:zinc finger protein 280D [Gene - HGNC]
- ZNF592:zinc finger protein 592 [Gene - OMIM - HGNC]
- ZNF609:zinc finger protein 609 [Gene - OMIM - HGNC]
- ZNF710:zinc finger protein 710 [Gene - HGNC]
- ZNF770:zinc finger protein 770 [Gene - HGNC]
- ZNF774:zinc finger protein 774 [Gene - HGNC]
- ZWILCH:zwilch kinetochore protein [Gene - OMIM - HGNC]
- Variant type:
- Duplication
- Cytogenetic location:
- 15q13.2-26.3
- Genomic location:
- Chr15: 31115047 - 102354857 (on Assembly GRCh37)
- HGVS:
- NC_000015.9:g.31115047_102354857dupThis HGVS expression did not pass validation
Condition(s)
- Synonyms:
- none provided
- Identifiers:
- MedGen: C3661900
Assertion and evidence details
Submission Accession | Submitter | Review Status (Assertion method) | Clinical Significance (Last evaluated) | Origin | Method | Citations |
---|---|---|---|---|---|---|
SCV000804081 | Geisinger Autism and Developmental Medicine Institute, Geisinger Health System | criteria provided, single submitter (ACMG CNV Guidelines, 2011) | Pathogenic (Apr 5, 2018) | de novo | provider interpretation |
Summary from all submissions
Ethnicity | Origin | Affected | Individuals | Families | Chromosomes tested | Number Tested | Family history | Method |
---|---|---|---|---|---|---|---|---|
not provided | de novo | unknown | not provided | not provided | not provided | not provided | not provided | provider interpretation |
Citations
PubMed
Kearney HM, Thorland EC, Brown KK, Quintero-Rivera F, South ST; Working Group of the American College of Medical Genetics Laboratory Quality Assurance Committee.
Genet Med. 2011 Jul;13(7):680-5. doi: 10.1097/GIM.0b013e3182217a3a.
- PMID:
- 21681106
Details of each submission
From Geisinger Autism and Developmental Medicine Institute, Geisinger Health System, SCV000804081.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | provider interpretation | PubMed (1) |
Description
This duplication was identified in a 4 year old female with global developmental delays, hearing impairment, sleep problems, short stature, esotropia, chronic constipation, anemia, and small PFO. Renal ultrasound was normal. Notable facial features include a long, narrow face, upslanting palpebral fissures, infraorbital creases, bulbous nasal tip, anteverted nares, and mild retrognathia. This patient also has a pathogenic 39 Mb terminal deletion of Xp22.3p11.2. These copy number variants are a result of a de novo rearrangement: 46,X,der(X)t(X;15)(p11.4;q11.2).
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | de novo | unknown | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
Last Updated: Sep 1, 2024