U.S. flag

An official website of the United States government

NM_005476.7(GNE):c.165-9C>T AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Nov 4, 2020
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000725157.18

Allele description [Variation Report for NM_005476.7(GNE):c.165-9C>T]

NM_005476.7(GNE):c.165-9C>T

Gene:
GNE:glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9p13.3
Genomic location:
Preferred name:
NM_005476.7(GNE):c.165-9C>T
HGVS:
  • NC_000009.12:g.36246491G>A
  • NG_008246.1:g.35554C>T
  • NM_001128227.3:c.258-9C>T
  • NM_001190383.3:c.165-9C>T
  • NM_001190384.3:c.-13-9C>T
  • NM_001190388.2:c.-13-9C>T
  • NM_001374797.1:c.165-9C>T
  • NM_001374798.1:c.-13-9C>T
  • NM_005476.7:c.165-9C>TMANE SELECT
  • LRG_1197t1:c.258-9C>T
  • LRG_1197t2:c.165-9C>T
  • LRG_1197:g.35554C>T
  • NC_000009.11:g.36246488G>A
  • NM_001128227.2:c.258-9C>T
  • NM_005476.5:c.165-9C>T
Links:
dbSNP: rs760509369
NCBI 1000 Genomes Browser:
rs760509369
Molecular consequence:
  • NM_001128227.3:c.258-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001190383.3:c.165-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001190384.3:c.-13-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001190388.2:c.-13-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374797.1:c.165-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374798.1:c.-13-9C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_005476.7:c.165-9C>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000334548Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Oct 3, 2016)
germlineclinical testing

Citation Link,

SCV000726659GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Nov 4, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000334548.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From GeneDx, SCV000726659.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024