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NM_000410.4(HFE):c.187C>G (p.His63Asp) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 31, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000763144.10

Allele description [Variation Report for NM_000410.4(HFE):c.187C>G (p.His63Asp)]

NM_000410.4(HFE):c.187C>G (p.His63Asp)

Genes:
HFE-AS1:HFE antisense RNA 1 [Gene - HGNC]
HFE:homeostatic iron regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.2
Genomic location:
Preferred name:
NM_000410.4(HFE):c.187C>G (p.His63Asp)
HGVS:
  • NC_000006.12:g.26090951C>G
  • NG_008720.2:g.8671C>G
  • NM_000410.4:c.187C>GMANE SELECT
  • NM_001300749.3:c.187C>G
  • NM_001384164.1:c.187C>G
  • NM_001406751.1:c.187C>G
  • NM_139003.3:c.187C>G
  • NM_139004.3:c.187C>G
  • NM_139006.3:c.187C>G
  • NM_139007.3:c.77-363C>G
  • NM_139008.3:c.77-363C>G
  • NM_139009.3:c.118C>G
  • NM_139010.3:c.77-1734C>G
  • NM_139011.3:c.77-2168C>G
  • NP_000401.1:p.His63Asp
  • NP_000401.1:p.His63Asp
  • NP_000401.1:p.His63Asp
  • NP_001287678.1:p.His63Asp
  • NP_001287678.1:p.His63Asp
  • NP_001371093.1:p.His63Asp
  • NP_001393680.1:p.His63Asp
  • NP_620572.1:p.His63Asp
  • NP_620573.1:p.His63Asp
  • NP_620575.1:p.His63Asp
  • NP_620578.1:p.His40Asp
  • LRG_748t1:c.187C>G
  • LRG_748:g.8671C>G
  • LRG_748p1:p.His63Asp
  • NC_000006.11:g.26091179C>G
  • NG_008720.1:p.His63Asp
  • NM_000410.3:c.187C>G
  • NM_001300749.2:c.187C>G
  • NM_001300749.2:c.187C>G
  • NM_001384164.1:c.187C>G
  • NM_139011.2:c.77-2168C>G
  • NR_144383.1:n.84G>C
  • Q30201:p.His63Asp
  • c.187C>G(H63D)
Protein change:
H40D; His63Asp
Links:
Genetic Testing Registry (GTR): GTR000021464; Genetic Testing Registry (GTR): GTR000558915; UniProtKB: Q30201#VAR_004396; OMIM: 613609.0002; dbSNP: rs1799945
NCBI 1000 Genomes Browser:
rs1799945
Molecular consequence:
  • NM_139007.3:c.77-363C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_139008.3:c.77-363C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_139010.3:c.77-1734C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_139011.3:c.77-2168C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000410.4:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001300749.3:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384164.1:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406751.1:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139003.3:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139004.3:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139006.3:c.187C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139009.3:c.118C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_144383.1:n.84G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Functional consequence:
Unknown function

Condition(s)

Name:
Alzheimer disease
Synonyms:
Presenile and senile dementia; Alzheimer's disease
Identifiers:
MONDO: MONDO:0004975; MeSH: D000544; MedGen: C0002395; Orphanet: 1020; Human Phenotype Ontology: HP:0002511
Name:
Variegate porphyria (VP)
Synonyms:
Porphyria, South African type; Protoporphyrinogen oxidase deficiency; PPOX deficiency
Identifiers:
MONDO: MONDO:0008297; MedGen: C0162532; Orphanet: 79473; OMIM: 176200
Name:
Microvascular complications of diabetes, susceptibility to, 7
Synonyms:
Microvascular complications of diabetes 7
Identifiers:
MONDO: MONDO:0012971; MedGen: C2673520; OMIM: 612635
Name:
Hemochromatosis type 1 (HFE1)
Synonyms:
HFE-Associated Hereditary Hemochromatosis
Identifiers:
MONDO: MONDO:0021001; MedGen: C3469186; OMIM: 235200
Name:
Transferrin serum level quantitative trait locus 2 (TFQTL2)
Identifiers:
MedGen: C3280096; OMIM: 614193
Name:
Familial porphyria cutanea tarda (PCT)
Synonyms:
PCT, TYPE II; PORPHYRIA CUTANEA TARDA, TYPE II; PORPHYRIA, HEPATOCUTANEOUS TYPE; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008296; MedGen: C0268323; Orphanet: 101330; OMIM: 176100

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000893709Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Oct 31, 2018) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753
PMC

Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL.

Genetics in medicine : official journal of the American College of Medical Genetics. 2015 Mar 5; 17(5): 405-424

PMC [article]
PMCID:
PMC4544753
PMID:
25741868
DOI:
10.1038/gim.2015.30

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV000893709.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024