NM_001220500.2(FCER2):c.954del (p.Leu319fs) AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 31, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000904385.5

Allele description [Variation Report for NM_001220500.2(FCER2):c.954del (p.Leu319fs)]

NM_001220500.2(FCER2):c.954del (p.Leu319fs)

Gene:

FCER2:Fc epsilon receptor II [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

19p13.2

Genomic location:

Preferred name:

NM_001220500.2(FCER2):c.954del (p.Leu319fs)

HGVS:

NC_000019.10:g.7689205del
NG_029554.1:g.17942del
NM_001207019.3:c.951del
NM_001220500.2:c.954delMANE SELECT
NM_002002.5:c.954del
NP_001193948.2:p.Leu318fs
NP_001207429.1:p.Leu319fs
NP_001993.2:p.Leu319fs
NP_001993.2:p.Leu319fs
NC_000019.9:g.7754091del
NM_002002.4:c.954del
NM_002002.4:c.954delT

Protein change:

L318fs

Links:

dbSNP: rs376822599

NCBI 1000 Genomes Browser:

rs376822599

Molecular consequence:

NM_001207019.3:c.951del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001220500.2:c.954del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_002002.5:c.954del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001048899	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Dec 31, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001048899

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Dec 31, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001048899.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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