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NM_001372327.1(SLC29A1):c.20C>T (p.Pro7Leu) AND Squamous cell carcinoma of the head and neck

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 19, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000993801.1

Allele description [Variation Report for NM_001372327.1(SLC29A1):c.20C>T (p.Pro7Leu)]

NM_001372327.1(SLC29A1):c.20C>T (p.Pro7Leu)

Genes:
POLR1C:RNA polymerase I and III subunit C [Gene - OMIM - HGNC]
SLC29A1:solute carrier family 29 member 1 (Augustine blood group) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.1
Genomic location:
Preferred name:
NM_001372327.1(SLC29A1):c.20C>T (p.Pro7Leu)
HGVS:
  • NC_000006.12:g.44227333C>T
  • NG_042893.1:g.12829C>T
  • NM_001078175.3:c.20C>T
  • NM_001078177.2:c.20C>T
  • NM_001304462.2:c.257C>T
  • NM_001304465.2:c.98C>T
  • NM_001304466.2:c.95C>T
  • NM_001372327.1:c.20C>TMANE SELECT
  • NP_001071643.1:p.Pro7Leu
  • NP_001071645.1:p.Pro7Leu
  • NP_001291391.1:p.Pro86Leu
  • NP_001291394.1:p.Pro33Leu
  • NP_001291395.1:p.Pro32Leu
  • NP_001359256.1:p.Pro7Leu
  • LRG_1027t1:c.20C>T
  • LRG_1027:g.12829C>T
  • LRG_1027p1:p.Pro7Leu
  • NC_000006.11:g.44195070C>T
Protein change:
P32L
Links:
dbSNP: rs1582941569
NCBI 1000 Genomes Browser:
rs1582941569
Molecular consequence:
  • NM_001078175.3:c.20C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001078177.2:c.20C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304462.2:c.257C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304465.2:c.98C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304466.2:c.95C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372327.1:c.20C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Squamous cell carcinoma of the head and neck (HNSCC)
Synonyms:
Head and neck squamous cell carcinoma; Carcinoma, squamous cell of head and neck; Squamous cell carcinoma, head and neck, somatic
Identifiers:
MONDO: MONDO:0010150; MeSH: D000077195; MedGen: C1168401; Orphanet: 67037; OMIM: 275355

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000996022Genome Sciences Centre, British Columbia Cancer Agency
no assertion criteria provided
Uncertain significance
(Jul 19, 2019)
somaticresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyes1not providednot providednot providednot providedresearch

Details of each submission

From Genome Sciences Centre, British Columbia Cancer Agency, SCV000996022.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 23, 2022