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GRCh37/hg19 6q21(chr6:109564694-112232351)x1 AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 8, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001007557.1

Allele description [Variation Report for GRCh37/hg19 6q21(chr6:109564694-112232351)x1]

GRCh37/hg19 6q21(chr6:109564694-112232351)x1

Genes:
  • CD164:CD164 molecule [Gene - OMIM - HGNC]
  • DDO:D-aspartate oxidase [Gene - OMIM - HGNC]
  • FIG4:FIG4 phosphoinositide 5-phosphatase [Gene - OMIM - HGNC]
  • FYN:FYN proto-oncogene, Src family tyrosine kinase [Gene - OMIM - HGNC]
  • GPR6:G protein-coupled receptor 6 [Gene - OMIM - HGNC]
  • REV3L:REV3 like, DNA directed polymerase zeta catalytic subunit [Gene - OMIM - HGNC]
  • TRAF3IP2:TRAF3 interacting protein 2 [Gene - OMIM - HGNC]
  • TRAF3IP2-AS1:TRAF3IP2 antisense RNA 1 [Gene - HGNC]
  • WASF1:WASP family member 1 [Gene - OMIM - HGNC]
  • AMD1:adenosylmethionine decarboxylase 1 [Gene - OMIM - HGNC]
  • AK9:adenylate kinase 9 [Gene - OMIM - HGNC]
  • CDC40:cell division cycle 40 [Gene - OMIM - HGNC]
  • CDK19:cyclin dependent kinase 19 [Gene - OMIM - HGNC]
  • GTF3C6:general transcription factor IIIC subunit 6 [Gene - OMIM - HGNC]
  • MFSD4B:major facilitator superfamily domain containing 4B [Gene - OMIM - HGNC]
  • METTL24:methyltransferase like 24 [Gene - HGNC]
  • MICAL1:microtubule associated monooxygenase, calponin and LIM domain containing 1 [Gene - OMIM - HGNC]
  • PPIL6:peptidylprolyl isomerase like 6 [Gene - HGNC]
  • RPF2:ribosome production factor 2 homolog [Gene - OMIM - HGNC]
  • SLC16A10:solute carrier family 16 member 10 [Gene - OMIM - HGNC]
  • SLC22A16:solute carrier family 22 member 16 [Gene - OMIM - HGNC]
  • SMPD2:sphingomyelin phosphodiesterase 2 [Gene - OMIM - HGNC]
  • ZBTB24:zinc finger and BTB domain containing 24 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
6q21
Genomic location:
Chr6: 109564694 - 112232351 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 6q21(chr6:109564694-112232351)x1
HGVS:
NC_000006.11:g.(?_109564694)_(112232351_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001167179Quest Diagnostics Nichols Institute San Juan Capistrano
no assertion criteria provided
Uncertain significance
(Oct 8, 2018)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001167179.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022