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NM_001184900.3(CARD8):c.130G>A (p.Val44Ile) AND Inflammatory bowel disease 30

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 10, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001263446.4

Allele description [Variation Report for NM_001184900.3(CARD8):c.130G>A (p.Val44Ile)]

NM_001184900.3(CARD8):c.130G>A (p.Val44Ile)

Gene:
CARD8:caspase recruitment domain family member 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_001184900.3(CARD8):c.130G>A (p.Val44Ile)
HGVS:
  • NC_000019.10:g.48238462C>T
  • NG_029574.2:g.22808G>A
  • NM_001184900.3:c.130G>AMANE SELECT
  • NM_001184901.1:c.59+2500G>A
  • NM_001184902.2:c.130G>A
  • NM_001184903.1:c.130G>A
  • NM_001184904.2:c.130G>A
  • NM_001351782.2:c.130G>A
  • NM_001351783.2:c.59+2500G>A
  • NM_001351784.2:c.-66+2500G>A
  • NM_001351786.2:c.-280+2500G>A
  • NM_001351787.2:c.-66+2500G>A
  • NM_001351788.2:c.59+2500G>A
  • NM_001351789.2:c.59+2500G>A
  • NM_001351790.2:c.-73G>A
  • NM_001351791.2:c.-66+2500G>A
  • NM_001351792.2:c.-66+2500G>A
  • NM_001365950.1:c.-66+2500G>A
  • NM_014959.5:c.59+2500G>A
  • NP_001171829.1:p.Val44Ile
  • NP_001171831.1:p.Val44Ile
  • NP_001171832.1:p.Val44Ile
  • NP_001171833.1:p.Val44Ile
  • NP_001338711.1:p.Val44Ile
  • NC_000019.9:g.48741719C>T
  • NM_001184902.1:c.130G>A
  • NR_033679.1:n.173G>A
Protein change:
V44I
Links:
OMIM: 609051.0001; dbSNP: rs879255364
NCBI 1000 Genomes Browser:
rs879255364
Molecular consequence:
  • NM_001351790.2:c.-73G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001184901.1:c.59+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351783.2:c.59+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351784.2:c.-66+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351786.2:c.-280+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351787.2:c.-66+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351788.2:c.59+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351789.2:c.59+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351791.2:c.-66+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351792.2:c.-66+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365950.1:c.-66+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_014959.5:c.59+2500G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001184900.3:c.130G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184902.2:c.130G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184903.1:c.130G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184904.2:c.130G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351782.2:c.130G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_033679.1:n.173G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Inflammatory bowel disease 30
Synonyms:
INFLAMMATORY BOWEL DISEASE (CROHN DISEASE) 30
Identifiers:
MONDO: MONDO:0033643; MedGen: C5436750; OMIM: 619079

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001441515OMIM
no assertion criteria provided
Pathogenic
(May 10, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Loss-of-function CARD8 mutation causes NLRP3 inflammasome activation and Crohn's disease.

Mao L, Kitani A, Similuk M, Oler AJ, Albenberg L, Kelsen J, Aktay A, Quezado M, Yao M, Montgomery-Recht K, Fuss IJ, Strober W.

J Clin Invest. 2018 May 1;128(5):1793-1806. doi: 10.1172/JCI98642. Epub 2018 Mar 26.

PubMed [citation]
PMID:
29408806
PMCID:
PMC5919822

Details of each submission

From OMIM, SCV001441515.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a boy, his mother, and his maternal aunt with Crohn disease (IBD30; 619079), Mao et al. (2018) identified heterozygosity for a C-to-T transition in exon 5 of the CARD8 gene (chr19.48,741,719C-T, GRCh37), resulting in a val44-to-ile (V44I) substitution in the T60 isoform. The mutation, which was not found in the boy's unaffected father, was present in the gnomAD database at a minor allele frequency of 0.0015%. Proband serum showed increased levels of the cytokines IL1B (147720) and IL6 (147620) compared to sex-matched control sera. In addition, supernatants from proband peripheral blood mononuclear cells and monocyte cultures had significantly increased amounts of IL1B compared to controls, consistent with dysregulation of the NLRP3 (606416) inflammasome. Cells from the proband's affected mother and aunt displayed similar overactivity, suggesting that the V44I mutation negates the inhibitory role of CARD8 on NLRP3 inflammasome activation. Experiments with transfected HEK293 cells demonstrated that the V44I mutant exerts a dominant-negative effect by binding to and forming oligomers with unmutated T60 or T48 CARD8, which impedes binding to NLRP3. Additional studies suggested that overactivation of the NLRP3 inflammasome in CD patients with the V44I mutant is caused by both reduced phosphorylation and reduced polyubiquitination of NLRP3.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024