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NM_001130438.3(SPTAN1):c.980T>C (p.Leu327Pro) AND Developmental and epileptic encephalopathy, 5

Germline classification:
Likely benign (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001269401.2

Allele description [Variation Report for NM_001130438.3(SPTAN1):c.980T>C (p.Leu327Pro)]

NM_001130438.3(SPTAN1):c.980T>C (p.Leu327Pro)

Gene:
SPTAN1:spectrin alpha, non-erythrocytic 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001130438.3(SPTAN1):c.980T>C (p.Leu327Pro)
HGVS:
  • NC_000009.12:g.128577401T>C
  • NG_027748.1:g.29844T>C
  • NM_001130438.3:c.980T>CMANE SELECT
  • NM_001195532.2:c.980T>C
  • NM_001363759.2:c.980T>C
  • NM_001363765.2:c.980T>C
  • NM_001375310.1:c.980T>C
  • NM_001375311.2:c.980T>C
  • NM_001375312.2:c.1016T>C
  • NM_001375313.1:c.980T>C
  • NM_001375314.2:c.980T>C
  • NM_001375318.1:c.1016T>C
  • NM_003127.4:c.980T>C
  • NP_001123910.1:p.Leu327Pro
  • NP_001182461.1:p.Leu327Pro
  • NP_001350688.1:p.Leu327Pro
  • NP_001350694.1:p.Leu327Pro
  • NP_001362239.1:p.Leu327Pro
  • NP_001362240.1:p.Leu327Pro
  • NP_001362241.2:p.Leu339Pro
  • NP_001362242.1:p.Leu327Pro
  • NP_001362243.1:p.Leu327Pro
  • NP_001362247.1:p.Leu339Pro
  • NP_003118.2:p.Leu327Pro
  • NC_000009.11:g.131339680T>C
  • NM_001130438.2:c.980T>C
Protein change:
L327P
Links:
dbSNP: rs1851427709
NCBI 1000 Genomes Browser:
rs1851427709
Molecular consequence:
  • NM_001130438.3:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195532.2:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363759.2:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363765.2:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375310.1:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375311.2:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375312.2:c.1016T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375313.1:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375314.2:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375318.1:c.1016T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003127.4:c.980T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Developmental and epileptic encephalopathy, 5 (DEE5)
Synonyms:
Early infantile epileptic encephalopathy 5
Identifiers:
MONDO: MONDO:0013277; MedGen: C3150731; Orphanet: 3451; OMIM: 613477

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001448684Génétique des Maladies du Développement, Hospices Civils de Lyon
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benignmaternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Génétique des Maladies du Développement, Hospices Civils de Lyon, SCV001448684.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providedclinical testing PubMed (1)

Description

20A1923

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024