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NM_014712.3(SETD1A):c.757C>T (p.Arg253Ter) AND Schizophrenia

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001801339.2

Allele description [Variation Report for NM_014712.3(SETD1A):c.757C>T (p.Arg253Ter)]

NM_014712.3(SETD1A):c.757C>T (p.Arg253Ter)

Gene:
SETD1A:SET domain containing 1A, histone lysine methyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p11.2
Genomic location:
Preferred name:
NM_014712.3(SETD1A):c.757C>T (p.Arg253Ter)
HGVS:
  • NC_000016.10:g.30964211C>T
  • NG_052948.1:g.11918C>T
  • NM_014712.3:c.757C>TMANE SELECT
  • NP_055527.1:p.Arg253Ter
  • NC_000016.9:g.30975532C>T
  • NM_014712.2:c.757C>T
Protein change:
R253*
Links:
dbSNP: rs2056099559
NCBI 1000 Genomes Browser:
rs2056099559
Molecular consequence:
  • NM_014712.3:c.757C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Schizophrenia (SCZD)
Identifiers:
MONDO: MONDO:0005090; MeSH: D012559; MedGen: C0036341; OMIM: 181500; Human Phenotype Ontology: HP:0100753

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002047548Génétique des Maladies du Développement, Hospices Civils de Lyon
no assertion criteria provided
Pathogenicmaternalclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Génétique des Maladies du Développement, Hospices Civils de Lyon, SCV002047548.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024