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NM_006947.4(SRP72):c.620G>A (p.Arg207His) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 28, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001852568.4

Allele description [Variation Report for NM_006947.4(SRP72):c.620G>A (p.Arg207His)]

NM_006947.4(SRP72):c.620G>A (p.Arg207His)

Gene:
SRP72:signal recognition particle 72 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q12
Genomic location:
Preferred name:
NM_006947.4(SRP72):c.620G>A (p.Arg207His)
HGVS:
  • NC_000004.12:g.56476680G>A
  • NG_032796.1:g.14085G>A
  • NM_001267722.2:c.620G>A
  • NM_006947.4:c.620G>AMANE SELECT
  • NP_001254651.1:p.Arg207His
  • NP_008878.3:p.Arg207His
  • LRG_1151t1:c.620G>A
  • LRG_1151:g.14085G>A
  • LRG_1151p1:p.Arg207His
  • NC_000004.11:g.57342846G>A
  • NR_151856.2:n.639G>A
  • O76094:p.Arg207His
Protein change:
R207H; ARG207HIS
Links:
UniProtKB: O76094#VAR_068522; OMIM: 602122.0002; dbSNP: rs387907189
NCBI 1000 Genomes Browser:
rs387907189
Molecular consequence:
  • NM_001267722.2:c.620G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006947.4:c.620G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_151856.2:n.639G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002131151Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Apr 28, 2023)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Exome sequencing identifies autosomal-dominant SRP72 mutations associated with familial aplasia and myelodysplasia.

Kirwan M, Walne AJ, Plagnol V, Velangi M, Ho A, Hossain U, Vulliamy T, Dokal I.

Am J Hum Genet. 2012 May 4;90(5):888-92. doi: 10.1016/j.ajhg.2012.03.020. Epub 2012 Apr 26.

PubMed [citation]
PMID:
22541560
PMCID:
PMC3376490

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002131151.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies are conflicting or provide insufficient evidence to determine the effect of this variant on SRP72 function (PMID: 22541560). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on SRP72 protein function. ClinVar contains an entry for this variant (Variation ID: 31660). This missense change has been observed in individual(s) with clinical features of SRP72-related conditions (PMID: 22541560). This variant is present in population databases (rs387907189, gnomAD 0.007%). This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 207 of the SRP72 protein (p.Arg207His).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024