GRCh37/hg19 20p13(chr20:61568-806878) AND not specified

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Mar 1, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002052694.3

Allele description [Variation Report for GRCh37/hg19 20p13(chr20:61568-806878)]

GRCh37/hg19 20p13(chr20:61568-806878)

Genes:

RBCK1:RANBP2-type and C3HC4-type zinc finger containing 1 [Gene - OMIM - HGNC]
SOX12:SRY-box transcription factor 12 [Gene - OMIM - HGNC]
TBC1D20:TBC1 domain family member 20 [Gene - OMIM - HGNC]
CSNK2A1:casein kinase 2 alpha 1 [Gene - OMIM - HGNC]
C20orf96:chromosome 20 open reading frame 96 [Gene - HGNC]
DEFB125:defensin beta 125 [Gene - HGNC]
DEFB126:defensin beta 126 [Gene - OMIM - HGNC]
DEFB127:defensin beta 127 [Gene - HGNC]
DEFB128:defensin beta 128 [Gene - HGNC]
DEFB129:defensin beta 129 [Gene - HGNC]
DEFB132:defensin beta 132 [Gene - HGNC]
NRSN2:neurensin 2 [Gene - OMIM - HGNC]
SCRT2:scratch family transcriptional repressor 2 [Gene - HGNC]
SLC52A3:solute carrier family 52 member 3 [Gene - OMIM - HGNC]
SRXN1:sulfiredoxin 1 [Gene - OMIM - HGNC]
TCF15:transcription factor 15 [Gene - OMIM - HGNC]
TRIB3:tribbles pseudokinase 3 [Gene - OMIM - HGNC]
ZCCHC3:zinc finger CCHC-type containing 3 [Gene - OMIM - HGNC]

Variant type:

copy number loss

Cytogenetic location:

20p13

Genomic location:

Chr20: 61568 - 806878 (on Assembly GRCh37)

Preferred name:

GRCh37/hg19 20p13(chr20:61568-806878)

HGVS:

NC_000020.10:g.(?_61568)_(806878_?)del

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002319803	ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories	criteria provided, single submitter (ARUP Cytogenomic Constitutional CNV Assertion Criteria)	Likely pathogenic (Mar 1, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002319803

ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories

criteria provided, single submitter

(ARUP Cytogenomic Constitutional CNV Assertion Criteria)

Likely pathogenic
(Mar 1, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	1	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV002319803.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Mar 26, 2023

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Relating variation to medicine